PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pavir.5KG116900.1.p

Organism

Panicum virgatum

Taxonomic ID

38727

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum

Family

LBD

Protein Properties

Length: 298aa MW: 31683.8 Da PI: 7.6629

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pavir.5KG116900.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	95.8	4.6e-30	4	106	1	98
DUF260 1 aCaaCkvlrrkCakdCvlapyf.....paeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqq 85 +C++C+vlr++C++ C+++p++ p++q +++ +++k++G++ +++l++a pe+ r+++++sl+yeA+ r+ +PvyG+vg+++++++ Pavir.5KG116900.1.p 4 SCNGCRVLRKGCSDTCAIRPCLqwirsPDAQGNATVFLAKFYGRAGLINLITAGPENVRPAIFRSLLYEACGRMLNPVYGSVGLLWSGNW 93 6***********************99********************************************************** PP DUF260 86 qleqlkaelallk 98 ql+q+++e +l++ Pavir.5KG116900.1.p 94 QLCQSAVESVLRG 106 ****9988765 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PIRSF	PIRSF038155	2.8E-90	1	291	IPR017414	LOB domain-containing protein 10/36/41
PROSITE profile	PS50891	16.303	3	109	IPR004883	Lateral organ boundaries, LOB
Pfam	PF03195	1.6E-23	4	102	IPR004883	Lateral organ boundaries, LOB

Sequence ? help Back to Top
Protein Sequence Length: 298 aa Download sequence Send to blast
MRMSCNGCRV LRKGCSDTCA IRPCLQWIRS PDAQGNATVF LAKFYGRAGL INLITAGPEN 60 VRPAIFRSLL YEACGRMLNP VYGSVGLLWS GNWQLCQSAV ESVLRGMPIA QPPPAAATAV 120 PPLRTCDIRH VARRQAADQG AVAAAALHRM ANSSRGQFKR SGGGAHRSSA AGCGDSAIEL 180 VFSQPAAAML ADVRQAQPLN WAPRQPSQEY SAGSLDAAPE TDSNASGDTV EVSHVSQSEP 240 EPPRESDERA DGLDLTLGLP PTAHKTEPSD FDDEQLCHRG EPRVKLGLAM DSISRAR*

Expression -- Description ? help Back to Top
Source	Description
Uniprot	TISSUE SPECIFICITY: Expressed in young shoots, roots, stems, leaves and flowers. {ECO:0000269\|PubMed:12068116}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Pavir.5KG116900.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	FP100502	1e-144	FP100502.1 Phyllostachys edulis cDNA clone: bphyem111j02, full insert sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_025818644.1	1e-171	LOB domain-containing protein 42-like
Swissprot	Q9M886	3e-70	LBD41_ARATH; LOB domain-containing protein 41
TrEMBL	A0A3L6R371	1e-175	A0A3L6R371_PANMI; LOB domain-containing protein 42
STRING	Pavir.Ea00650.1.p	0.0	(Panicum virgatum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP1235	37	127

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G02550.1	1e-64	LOB domain-containing protein 41

Link Out ? help Back to Top
Phytozome	Pavir.5KG116900.1.p