PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.5KG095200.1.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family MYB
Protein Properties Length: 296aa    MW: 32793.9 Da    PI: 9.6687
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.5KG095200.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding28.34.2e-093275446
                         S-HHHHHHHHHHHHHTTTT..-HHHHHHHHTTTS-HHHHHHHHHH CS
      Myb_DNA-binding  4 WTteEdellvdavkqlGgg..tWktIartmgkgRtlkqcksrwqk 46
                         WT+eE +++ +a + l  +  +W+ +ar ++ gRt  ++++++ +
  Pavir.5KG095200.1.p 32 WTAEENKQFERALAGLDLRcpDWEQVARAIP-GRTVREVVHHFKS 75
                         *****************99************.**********986 PP
2Myb_DNA-binding49.31.1e-15143187347
                          SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
      Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                          +WT+eE++l++ + k++G+g+W+ I+r + ++Rt+ q+ s+ qky
  Pavir.5KG095200.1.p 143 PWTEEEHKLFLLGLKKHGKGDWRNISRNFVQTRTPTQVASHAQKY 187
                          8*******************************************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS512939.6872781IPR017884SANT domain
SMARTSM007172.3E-42879IPR001005SANT/Myb domain
SuperFamilySSF466892.87E-83284IPR009057Homeodomain-like
CDDcd001671.74E-73276No hitNo description
PfamPF002492.0E-63276IPR001005SANT/Myb domain
PROSITE profilePS5129418.412136192IPR017930Myb domain
SuperFamilySSF466897.18E-18137192IPR009057Homeodomain-like
TIGRFAMsTIGR015574.4E-16139190IPR006447Myb domain, plants
Gene3DG3DSA:1.10.10.603.4E-12140186IPR009057Homeodomain-like
SMARTSM007173.5E-13140190IPR001005SANT/Myb domain
CDDcd001677.84E-12143188No hitNo description
PfamPF002494.3E-13143187IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 296 aa     Download sequence    Send to blast
MMREAYMEVL PPMDHIASQR NGWYHHPALR IWTAEENKQF ERALAGLDLR CPDWEQVARA  60
IPGRTVREVV HHFKSLEVDV QQIENGMVPF PFYGGGGGSF TLQWDGNGGG GPGDFRHGYR  120
FGGGCGKRHP GRTPEQERKK GVPWTEEEHK LFLLGLKKHG KGDWRNISRN FVQTRTPTQV  180
ASHAQKYFIR LNSGGKDKRR SSIHDITMVN LTDDRPPSPS QSSLITNQSN ASAPPSAVGQ  240
FSLTADAKQN GTANLPFNSP SRTPVMPTFA MGLQDQGLQC GPLHDQLVGN PSMLF*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2cjj_A5e-153099979RADIALIS
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Pvr.97840.0callus| leaf| root| stem
Expression -- Description ? help Back to Top
Source Description
UniprotDEVELOPMENTAL STAGE: Detected in the apical inflorescence meristem, in bract primordia arising in its periphery and in floral meristems produced in the axils of bracts (stages 0-3). From stage 3 to stage 8, detected in all floral organs irrespective of their dorsoventral positions. From stage 9, barely detectable in bracts, sepals, and stamens. In the corolla, however, expression was maintained and enhanced in some regions. Within ventral and lateral petals at stage 9, asymmetric pattern of expression with high levels of transcripts in the inner epidermis of the furrow and very reduced levels in the remaining cell layers. In the dorsal petals, from stage 9 onward, detected but with a more even distribution across cell layers than in the ventral petal. {ECO:0000269|PubMed:11937495}.
Functional Description ? help Back to Top
Source Description
UniProtInvolved in the dorsovental asymmetry of flowers. Promotes ventral identity. {ECO:0000269|PubMed:11937495, ECO:0000269|PubMed:9118809}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.5KG095200.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025817822.10.0transcription factor DIVARICATA-like
SwissprotQ8S9H75e-75DIV_ANTMA; Transcription factor DIVARICATA
TrEMBLA0A3L6SMT60.0A0A3L6SMT6_PANMI; Transcription factor DIVARICATA
STRINGPavir.Ea00523.1.p0.0(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP78863348
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G38090.13e-58MYB family protein
Publications ? help Back to Top
  1. Galego L,Almeida J
    Role of DIVARICATA in the control of dorsoventral asymmetry in Antirrhinum flowers.
    Genes Dev., 2002. 16(7): p. 880-91
    [PMID:11937495]
  2. Almeida J,Rocheta M,Galego L
    Genetic control of flower shape in Antirrhinum majus.
    Development, 1997. 124(7): p. 1387-92
    [PMID:9118809]