PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pavir.5KG091900.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
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Family | FAR1 | ||||||||
Protein Properties | Length: 240aa MW: 27559.6 Da PI: 8.5834 | ||||||||
Description | FAR1 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | FAR1 | 69.1 | 1.1e-21 | 12 | 100 | 2 | 90 |
FAR1 2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkek.dgkwevtkleleHnHela 90 f+ +Y+ + GF+vrk++++k+k +g++t+ ++vC ++g+r+e+k + + + +ra+trt+C+ ++ v +++ gk++v++l+leHnH l+ Pavir.5KG091900.1.p 12 FWIRYGGQKGFEVRKRYTNKRKSDGKVTSCRYVCANKGHRKEDKMD-HLIKCPRAKTRTHCQVRMGVVLDQeMGKYKVADLVLEHNHILQ 100 999****************************************999.999******************99999**************985 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF03101 | 1.4E-16 | 12 | 99 | IPR004330 | FAR1 DNA binding domain |
Sequence ? help Back to Top |
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Protein Sequence Length: 240 aa Download sequence Send to blast |
MEFNTVDEAW TFWIRYGGQK GFEVRKRYTN KRKSDGKVTS CRYVCANKGH RKEDKMDHLI 60 KCPRAKTRTH CQVRMGVVLD QEMGKYKVAD LVLEHNHILQ LLETSQLMVS QRKISELQGF 120 KIETADDAGI GPKAAHELAI IQVGGSLNLS YTLRSMLMYF QDKIAENPSF QYALHMDRDE 180 QIANIFWVDA KMITDYAYFG DVVSFDTTFG TNKESRPFGV FVGFNQFRET VVFVLQVVI* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Pavir.5KG091900.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AB108421 | 1e-164 | AB108421.1 Oryza sativa Japonica Group transposon AnacB14 DNA, complete sequence. | |||
GenBank | AC077693 | 1e-164 | AC077693.19 Oryza sativa chromosome 10 BAC OSJNBa0095C07 genomic sequence, complete sequence. | |||
GenBank | AP014966 | 1e-164 | AP014966.1 Oryza sativa Japonica Group DNA, chromosome 10, cultivar: Nipponbare, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_025876512.1 | 1e-149 | protein FAR1-RELATED SEQUENCE 5-like isoform X1 | ||||
Refseq | XP_025876513.1 | 1e-149 | protein FAR1-RELATED SEQUENCE 5-like isoform X2 | ||||
Refseq | XP_025877975.1 | 1e-148 | protein FAR1-RELATED SEQUENCE 5-like | ||||
TrEMBL | B8ALN6 | 1e-148 | B8ALN6_ORYSI; Uncharacterized protein | ||||
TrEMBL | B8BHR2 | 1e-146 | B8BHR2_ORYSI; Uncharacterized protein | ||||
STRING | OS10T0571900-00 | 1e-146 | (Oryza sativa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP18 | 32 | 967 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G38180.1 | 6e-36 | FAR1-related sequence 5 |
Link Out ? help Back to Top | |
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Phytozome | Pavir.5KG091900.1.p |