PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.5KG074200.1.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family MYB
Protein Properties Length: 260aa    MW: 28084.2 Da    PI: 4.8269
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.5KG074200.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding513.4e-162572148
                         TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
      Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                         +g W++eEde+l   ++ +G  tW+++a+  g++R++k+c++rw +yl
  Pavir.5KG074200.1.p 25 KGLWSPEEDERLFAQITYHGVSTWSSVAQLAGLRRSGKSCRLRWMNYL 72
                         678*******************************************97 PP
2Myb_DNA-binding45.22.1e-1480121346
                          SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
      Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                          + ++ E+e+++ + + lG++ W++Ia++m+ gRt++++k++w++
  Pavir.5KG074200.1.p  80 PISKREEEIIISLQQSLGNR-WSAIAAKMP-GRTDNEIKNYWNS 121
                          56889***************.*********.***********95 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129415.5352072IPR017930Myb domain
SMARTSM007179.1E-112474IPR001005SANT/Myb domain
SuperFamilySSF466895.99E-2824119IPR009057Homeodomain-like
PfamPF002492.2E-132572IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.609.0E-212679IPR009057Homeodomain-like
CDDcd001675.78E-92872No hitNo description
PROSITE profilePS5129421.74373127IPR017930Myb domain
SMARTSM007171.1E-1377125IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.604.8E-2480127IPR009057Homeodomain-like
CDDcd001672.09E-1080120No hitNo description
PfamPF002492.8E-1280121IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 260 aa     Download sequence    Send to blast
MVRKPSHGDT TGAGNGGTEA TKERKGLWSP EEDERLFAQI TYHGVSTWSS VAQLAGLRRS  60
GKSCRLRWMN YLRPDLKKEP ISKREEEIII SLQQSLGNRW SAIAAKMPGR TDNEIKNYWN  120
SRIKKRLNAA AAKAGSDDGA STEPAPAGEE KVEVEPTNNA ATEAGPMPIP ERFPVFACQL  180
LNGGIGGGSG SGENTPSTTS STQQKSGEES EACVGDSNMI HFLSFDDLDY PDDLLMDLPG  240
AMNAWETELY PSNSMSSLN*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A2e-25251297110B-MYB
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.5KG074200.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU9715591e-134EU971559.1 Zea mays clone 367166 anthocyanin regulatory C1 protein mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025817319.11e-159myb-related protein Hv33-like
TrEMBLA0A2T7DRN81e-168A0A2T7DRN8_9POAL; Uncharacterized protein
STRINGPavir.J24104.1.p0.0(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP87032545
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G26660.12e-47myb domain protein 86