PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.5KG055600.1.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family MYB_related
Protein Properties Length: 334aa    MW: 35315.5 Da    PI: 7.5998
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.5KG055600.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding36.98.3e-12110154347
                          SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
      Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                          +WT+eE+  ++ + ++l +g+W+ I+r +   Rt+ q+ s+ qky
  Pavir.5KG055600.1.p 110 PWTEEEHRMFLMGLQKLDKGDWRGISRNFVVSRTPTQVASHAQKY 154
                          8*******************************************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129416.569103159IPR017930Myb domain
SuperFamilySSF466892.99E-16105159IPR009057Homeodomain-like
TIGRFAMsTIGR015573.9E-18106158IPR006447Myb domain, plants
SMARTSM007172.3E-10107157IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.607.1E-11107153IPR009057Homeodomain-like
PfamPF002492.9E-9110154IPR001005SANT/Myb domain
CDDcd001673.20E-8110155No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 334 aa     Download sequence    Send to blast
MTRRCSHYSN NGHNSRTCPA RSGGVGGGGG VRLFGVRLTT ASAPAAMKKS ASMSCIASAL  60
GGWSGGSSSP VGGGGGGWGG GDGGAGYVSD DPAHASCSTN GRAERKKGTP WTEEEHRMFL  120
MGLQKLDKGD WRGISRNFVV SRTPTQVASH AQKYFIRQTN SSRRKRRSSL FDMVPEMPME  180
ESPAAVEQFA LQNTQGEATI SNEWPTLHRG QQKEVEFAKQ LPTQLSQHED SENAEPPLPL  240
PVPTVPAFYP ALVPVPLTLW PPSVAHVEEA GATHEILKPT PLNGKVVVKV DDVVSMSKLS  300
IGDASSGSME PTALSLQLIG STDANFSCQS TDE*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Pvr.81960.0callus| leaf
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.5KG055600.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0382700.0BT038270.1 Zea mays full-length cDNA clone ZM_BFb0221P08 mRNA, complete cds.
GenBankEU9652590.0EU965259.1 Zea mays clone 284869 myb-related transcription activator mRNA, complete cds.
GenBankHQ8587050.0HQ858705.1 Zea mays clone UT1161 MYB-RELATED transcription factor mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025816777.11e-180transcription factor MYBS3-like
RefseqXP_025816778.11e-180transcription factor MYBS3-like
TrEMBLA0A2S3HYJ71e-179A0A2S3HYJ7_9POAL; Uncharacterized protein
STRINGSb03g003270.11e-166(Sorghum bicolor)
STRINGGRMZM2G400489_P011e-166(Zea mays)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP19393791
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G47390.13e-56MYB_related family protein