PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pavir.5KG053800.2.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
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Family | MYB | ||||||||
Protein Properties | Length: 257aa MW: 27097.5 Da PI: 7.8031 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 55.2 | 1.6e-17 | 14 | 62 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT.-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGgg.tWktIartmgkgRtlkqcksrwqkyl 48 rg+W++eEde l +v+++G+g +W + +++ g++R++k+c++rw++yl Pavir.5KG053800.2.p 14 RGPWSPEEDEALRSYVQRHGSGgNWISMPKKAGLKRCGKSCRLRWLNYL 62 89*********************************************97 PP | |||||||
2 | Myb_DNA-binding | 44.2 | 4.5e-14 | 69 | 111 | 2 | 46 |
SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 g +T eEd ++ + +qlG++ W++Ia+ + gRt++++k++w++ Pavir.5KG053800.2.p 69 GGFTDEEDAVILSLYTQLGSK-WSLIASQLE-GRTDNDVKNYWNT 111 569******************.*********.***********97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 14.19 | 9 | 62 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 8.98E-28 | 12 | 109 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 1.9E-12 | 13 | 64 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 2.0E-16 | 14 | 62 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 2.2E-24 | 15 | 69 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 6.29E-10 | 16 | 62 | No hit | No description |
PROSITE profile | PS51294 | 21.653 | 63 | 117 | IPR017930 | Myb domain |
SMART | SM00717 | 5.4E-11 | 67 | 115 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 3.1E-11 | 69 | 111 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 4.8E-23 | 70 | 117 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 1.88E-9 | 71 | 113 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 257 aa Download sequence Send to blast |
MGRTPCCDRA TVKRGPWSPE EDEALRSYVQ RHGSGGNWIS MPKKAGLKRC GKSCRLRWLN 60 YLRPDIRHGG FTDEEDAVIL SLYTQLGSKW SLIASQLEGR TDNDVKNYWN TKLKKRLLAA 120 AATAGIVSTR SPPSVPRLPA APASTPAAAA ATVATHASSL FPLLAIPTVK TEMYTCDDFL 180 APAAFRDDPF AAADGSTSAS AASSASNWSA DNGAVGGGEG SFLLDFCAGS GLGAADDHLQ 240 LPGGYYYPLD PSLSLV* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1a5j_A | 3e-23 | 14 | 117 | 7 | 108 | B-MYB |
1h8a_C | 5e-23 | 12 | 117 | 25 | 128 | MYB TRANSFORMING PROTEIN |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Pavir.5KG053800.2.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | HF679416 | 1e-161 | HF679416.1 Saccharum hybrid cultivar Co 86032 mRNA for ScMYB10 protein. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_025817369.1 | 1e-158 | transcription factor RAX1-like | ||||
Refseq | XP_025817370.1 | 1e-158 | transcription factor RAX1-like | ||||
TrEMBL | A0A2S3HYM1 | 1e-156 | A0A2S3HYM1_9POAL; Uncharacterized protein | ||||
STRING | Pavir.Ea00256.1.p | 0.0 | (Panicum virgatum) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G57620.1 | 2e-61 | myb domain protein 36 |
Link Out ? help Back to Top | |
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Phytozome | Pavir.5KG053800.2.p |