PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.5KG052000.2.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family MYB_related
Protein Properties Length: 848aa    MW: 94576 Da    PI: 9.2324
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.5KG052000.2.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding30.48.8e-104686345
                         SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHH CS
      Myb_DNA-binding  3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwq 45
                         +W+++E  ++++a +++G++ Wk+I+  +g g++  +++s + 
  Pavir.5KG052000.2.p 46 KWSKDELTQFYEAYRRHGKD-WKKISLAVG-GKSSDMVRSLYS 86
                         8*****************99.*********.*******99665 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129311.3544299IPR017884SANT domain
SMARTSM007172.5E-44391IPR001005SANT/Myb domain
CDDcd001674.48E-64683No hitNo description
SuperFamilySSF466893.14E-94690IPR009057Homeodomain-like
PfamPF002491.3E-84685IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.607.3E-44685IPR009057Homeodomain-like
PfamPF065841.6E-31478578IPR033471DIRP domain
SMARTSM011357.6E-39478579IPR033471DIRP domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 848 aa     Download sequence    Send to blast
MAPAKGSRTI NKTIIKGYED QQQYDDPPSS SKAKQKKRKI SDLDPKWSKD ELTQFYEAYR  60
RHGKDWKKIS LAVGGKSSDM VRSLYSVHRT FLSLPERQAT AMGFIALVTG HHNASEKFTS  120
HIGDDKMIRA SGKARRRSEA TQQKATGRPD VHEHDCHEGK IAGFSSSFKK RYYGDFVRNS  180
QNHAVRRRTP RIPVIAPAVR NTIDEVSPDR SSGITETNKA GQDHMFLNTK ATGDTAICQQ  240
QLKKTRIQQP TGEGQTVKVE HETVMASDEG NMLVDSLNQH HIHRNIISED DMLVLDVLNS  300
LVNAPSKTSK LEIKVPSGSH GKTDSVLSGR REKDHPTIDL SKQGRAIGKS SASKTGKKRH  360
KKLLGAEVLA EAQKISVNNL VLPDAPRVGI TDDSSLCTDS ARVGIPEASE DISTKAPRAS  420
TEIKPEIRMS RRTRRKYQMQ CKRKHVSCNE DSDNLQAKKL LHCLSSESLR RWCAYEWFYS  480
AVDYPWFSDN EFVHYLNHAK LSHLSRLTRS EWSAIRSSLG KPRRFSDHFL AVEKEKLEDY  540
REKVRKIYAQ LRDGSRDSLP ADLARPFSVG QEVIVRHPSS RELCDGKVVM MGPDCYKVHF  600
VNPDLGVDIV KDTDCMPVNW LYNRPDNMRR ICLSNNVYSI LETEHIPDLA ASENWDLAVH  660
GVTVTSDKQL KVESVVNGER PPYWSTSDGH PTKSRGCPDN NGGHNNELES YIAAFVQKSL  720
SRARQMVDEA MKANSEGSDV RVRMPNQETD CVGPQSEATV RGAQLPSNLI SNCIATVLSI  780
KRLSDSRHPP ANIAGVLERA SSMLCPSCPE NLAIYKDIET CLSVIANQIL ALVPTALGNC  840
GPPMSPL*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Pvr.80091e-180callus| stem
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.5KG052000.2.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025816481.10.0protein ALWAYS EARLY 3-like
TrEMBLA0A2S3HZA00.0A0A2S3HZA0_9POAL; Uncharacterized protein
STRINGPavir.J02622.1.p0.0(Panicum virgatum)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G21430.23e-62DNA binding