PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Pavir.5KG052000.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
|
||||||||
Family | MYB_related | ||||||||
Protein Properties | Length: 878aa MW: 97885.7 Da PI: 9.1083 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 30.4 | 9.1e-10 | 46 | 86 | 3 | 45 |
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwq 45 +W+++E ++++a +++G++ Wk+I+ +g g++ +++s + Pavir.5KG052000.1.p 46 KWSKDELTQFYEAYRRHGKD-WKKISLAVG-GKSSDMVRSLYS 86 8*****************99.*********.*******99665 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51293 | 11.354 | 42 | 99 | IPR017884 | SANT domain |
SMART | SM00717 | 2.5E-4 | 43 | 91 | IPR001005 | SANT/Myb domain |
SuperFamily | SSF46689 | 3.21E-9 | 46 | 90 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 4.67E-6 | 46 | 83 | No hit | No description |
Pfam | PF00249 | 1.3E-8 | 46 | 85 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 7.6E-4 | 46 | 85 | IPR009057 | Homeodomain-like |
SMART | SM01135 | 7.6E-39 | 508 | 609 | IPR033471 | DIRP domain |
Pfam | PF06584 | 1.6E-31 | 508 | 608 | IPR033471 | DIRP domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 878 aa Download sequence Send to blast |
MAPAKGSRTI NKTIIKGYED QQQYDDPPSS SKAKQKKRKI SDLDPKWSKD ELTQFYEAYR 60 RHGKDWKKIS LAVGGKSSDM VRSLYSVHRT FLSLPERQAT AMGFIALVTG HHNASEKFTS 120 HIGDDKMIRA SGKARRRSEA TQQKATGRPD VHEHDCHEGK IAGFSSSFKK RYYGDFVRNS 180 QNHAVRRRTP RIPVIAPAVR NTIDEVSPGI ENIVNTTKRK YEATNKDCAM VPTNECSPDR 240 SSGITETNKA GQDHMFLNTK ATGDTAICQQ QLKKTRIQQP TGEGQTVKVE HETVMASDEG 300 NMLVDSLNQH HIHRNIISED DMLVLDVLNS LVNAPSKTSK LEIKVPSGSH GKTDSVLSGR 360 REKDHPTIDL SKQGRAIGKS SASKTGKKRH KKLLGAEVLA EAQKISVNNL VLPDAPRVGI 420 TDDSSLCTDS ARVGIPEASE DISTKAPRAS TEIKPEIRMS RRTRRKYQMQ CKRKHVSCNE 480 DSDNLQAKKL LHCLSSESLR RWCAYEWFYS AVDYPWFSDN EFVHYLNHAK LSHLSRLTRS 540 EWSAIRSSLG KPRRFSDHFL AVEKEKLEDY REKVRKIYAQ LRDGSRDSLP ADLARPFSVG 600 QEVIVRHPSS RELCDGKVVM MGPDCYKVHF VNPDLGVDIV KDTDCMPVNW LYNRPDNMRR 660 ICLSNNVYSI LETEHIPDLA ASENWDLAVH GVTVTSDKQL KVESVVNGER PPYWSTSDGH 720 PTKSRGCPDN NGGHNNELES YIAAFVQKSL SRARQMVDEA MKANSEGSDV RVRMPNQETD 780 CVGPQSEATV RGAQLPSNLI SNCIATVLSI KRLSDSRHPP ANIAGVLERA SSMLCPSCPE 840 NLAIYKDIET CLSVIANQIL ALVPTALGNC GPPMSPL* |
Expression -- UniGene ? help Back to Top | ||||||
---|---|---|---|---|---|---|
UniGene ID | E-value | Expressed in | ||||
Pvr.8009 | 1e-180 | callus| stem |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | Pavir.5KG052000.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_025816481.1 | 0.0 | protein ALWAYS EARLY 3-like | ||||
TrEMBL | A0A2T7DSD8 | 0.0 | A0A2T7DSD8_9POAL; Uncharacterized protein | ||||
STRING | Pavir.J02622.1.p | 0.0 | (Panicum virgatum) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP8696 | 30 | 38 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT3G21430.2 | 4e-62 | DNA binding |
Link Out ? help Back to Top | |
---|---|
Phytozome | Pavir.5KG052000.1.p |