PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pavir.5KG049600.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
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Family | bHLH | ||||||||
Protein Properties | Length: 462aa MW: 49200 Da PI: 6.7894 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 37.6 | 4.1e-12 | 266 | 308 | 8 | 55 |
HHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHHH CS HLH 8 rErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksLq 55 Er+RR+++N++f+ L+ +lP+ a K +K +iL +A eY++sL+ Pavir.5KG049600.1.p 266 SERKRREKLNDSFQALKAVLPPgA------KKDKTSILIRAREYVRSLE 308 6********************966......99999***********996 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50888 | 13.853 | 258 | 307 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 1.22E-12 | 260 | 312 | No hit | No description |
SuperFamily | SSF47459 | 7.98E-15 | 260 | 324 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 1.1E-12 | 262 | 306 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 2.1E-11 | 264 | 313 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 1.7E-9 | 266 | 308 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd14686 | 0.00129 | 299 | 327 | No hit | No description |
Gene3D | G3DSA:1.20.5.170 | 2.2E-4 | 307 | 325 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 462 aa Download sequence Send to blast |
MDSSCSSWLH GYINNAGNNG FMCGYAAGSC APSAGLQYRE EEEEEQQEQF LINSSHQIQH 60 HLNQINMRMN MDDDEASVYD VPASSDGGGV SPPIGVHNHP IGVDGGHGLL IAGSFPSSSA 120 SSSLSLPSAS ISCSPESSAH VLATPGSSQY LEVSSQVPLP PAVPYDHHGQ YANLHVPAAA 180 AAMAPATKTN TGAFKRYARH LGPKRPPKPG ACGQRMFKTA MSVLSKMHAA ARYSSQQQQQ 240 YYYQQAAAAE AAAPALSVNQ LQHMFSERKR REKLNDSFQA LKAVLPPGAK KDKTSILIRA 300 REYVRSLESK VAELEEKNRL LESRLVRGDD SSDDGSGKDA AAEDSGKNKV HVEITRAAKE 360 VRATAAEPPR ELCTLKIAVS SPCNMTDVAV RTLQCLKEQI GDGVTLVAMS TSGSAAEASE 420 ANTNNSPRAD LTLRIKSPPG WEEQPVRDAV AKVVADALTP P* |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 266 | 271 | ERKRRE |
2 | 267 | 272 | RKRREK |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Pavir.5KG049600.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_025817328.1 | 0.0 | putative transcription factor bHLH041 | ||||
TrEMBL | A0A2T7DSE3 | 0.0 | A0A2T7DSE3_9POAL; Uncharacterized protein | ||||
STRING | Pavir.Ea00369.1.p | 0.0 | (Panicum virgatum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP2900 | 31 | 82 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G56960.1 | 2e-21 | bHLH family protein |
Link Out ? help Back to Top | |
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Phytozome | Pavir.5KG049600.1.p |