PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.5KG046400.1.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family HD-ZIP
Protein Properties Length: 852aa    MW: 92474.9 Da    PI: 5.929
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.5KG046400.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox57.91.7e-181573357
                         --SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS
             Homeobox  3 kRttftkeqleeLeelFeknrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57
                         k  ++t+eq+e+Le+l++++++ps  +r++L + +    +++ +q+kvWFqNrR +ek+
  Pavir.5KG046400.1.p 15 KYVRYTPEQVEALERLYYECPKPSSLRRQQLVRDCpvlaNVDPKQIKVWFQNRRCREKQ 73
                         6789*****************************************************97 PP
2START177.11.1e-551633702204
                          HHHHHHHHHHHHHHHC-TT-EEEEEXCCTTEEEEEEESSS.SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-TT-SEEEEEEEECTT..E CS
                START   2 laeeaaqelvkkalaeepgWvkssesengdevlqkfeeskvdsgealrasgvvdmvlallveellddkeqWdetlakaetlevissg..g 89 
                          +aee+++e+++ka+ ++  Wv+++ +++g++++ +++ s+++ g a+ra+g+v m++a  v+e+l+d++ W ++++++e+++v+  g  g
  Pavir.5KG046400.1.p 163 IAEETLTEFLSKATGTAVEWVQMPGMKPGPDSIGIIAISHGCAGVAARACGLVGMEPA-KVAEILKDRPLWLRDCRSMEVVNVLPAGnnG 251
                          789*******************************************************.8888888888******************9** PP

                          EEEEEEEXXTTXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-TTS--....-TTSEE-EESSEEEEEEEECTCEEEEEEEE-EE--SS CS
                START  90 alqlmvaelqalsplvp.RdfvfvRyirqlgagdwvivdvSvdseqkppe...sssvvRaellpSgiliepksnghskvtwvehvdlkgr 175
                          +++l +++++a+++l+p Rdf+ +Ry+  l +g++v++++S++s+q  p+    ++++R+e+lpSg+li+p+++g+s +++v+h+dl+ +
  Pavir.5KG046400.1.p 252 TIELLYMQFYAPTTLAPaRDFWLLRYTSILDDGSLVVCERSLSSKQGGPSmplVQPFIRGEMLPSGFLIRPSDGGGSIIHIVDHMDLEPW 341
                          *************************************************999999*********************************** PP

                          XXHHHHHHHHHHHHHHHHHHHHHHTXXXX CS
                START 176 lphwllrslvksglaegaktwvatlqrqc 204
                          ++++++r+l++s+++ ++kt +a+l++++
  Pavir.5KG046400.1.p 342 SVPEVVRPLYESSAMVAQKTSMAALRYLR 370
                          *************************9986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5007115.3371074IPR001356Homeobox domain
SMARTSM003891.2E-141278IPR001356Homeobox domain
PfamPF000464.1E-161573IPR001356Homeobox domain
CDDcd000862.03E-151575No hitNo description
SuperFamilySSF466892.44E-161676IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.601.3E-171773IPR009057Homeodomain-like
CDDcd146864.17E-667106No hitNo description
PROSITE profilePS5084825.437153372IPR002913START domain
CDDcd088757.95E-75157371No hitNo description
Gene3DG3DSA:3.30.530.203.2E-23160366IPR023393START-like domain
SuperFamilySSF559613.71E-37162372No hitNo description
SMARTSM002341.4E-46162372IPR002913START domain
PfamPF018521.9E-53163370IPR002913START domain
PfamPF086703.2E-49703846IPR013978MEKHLA
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0008289Molecular Functionlipid binding
Sequence ? help Back to Top
Protein Sequence    Length: 852 aa     Download sequence    Send to blast
MVTAKEAAAA MDASKYVRYT PEQVEALERL YYECPKPSSL RRQQLVRDCP VLANVDPKQI  60
KVWFQNRRCR EKQRKESSRL QALNRKLTAM NKLLMEENDR LQKQVSQLVY ENGYYRQQTQ  120
SAGLTTTDTS CESVVTSGHQ NVAAAQPQAA QPRDASPAGL MSIAEETLTE FLSKATGTAV  180
EWVQMPGMKP GPDSIGIIAI SHGCAGVAAR ACGLVGMEPA KVAEILKDRP LWLRDCRSME  240
VVNVLPAGNN GTIELLYMQF YAPTTLAPAR DFWLLRYTSI LDDGSLVVCE RSLSSKQGGP  300
SMPLVQPFIR GEMLPSGFLI RPSDGGGSII HIVDHMDLEP WSVPEVVRPL YESSAMVAQK  360
TSMAALRYLR QVAHEDTHSV ITGWGRQPAA LWALSQKLTR GFNEALNGLA DDGWSVIESD  420
GVDDVCISVN SSPSKVINCN AAFNNGLPIV SSSVLCAKAS MLLQDVSPPA LLRFMREQRS  480
QWADSSLDAF FASAMKPNFC NLPMSRLGGF SGQVILPLAH TFDPEEFLEV IKLGNASTYQ  540
DALMHRDLFL LQMYNGVDEN TVGTCSELIF APIDASFSDD SPLLPSGFRI IPIDSPLDTS  600
SPKCTLDLAS TLEVGTPRSR ISGSGSGNAA CASSKAIMTI AFQFAFESHL QDSVATMARQ  660
YMRSIITSVQ RIALALSSSR LVPQVGGISH APAAASATPE AATLSRWICQ SYRFHFGSEL  720
IKSADANGCE AGLKALWHHA SAILCCSLKA MPVFTFANQS GLDMLETTLV ALQDITLEKV  780
LDDQGRRSLC AELPGVVEQG FACIPGGLCV SGLGRPVSYE KALAWKVLDD DSGAHCICFM  840
FVNWSFVAST M*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Pvr.179040.0root| stem
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in roots, stems and leaf blades. {ECO:0000269|PubMed:17999151}.
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.5KG046400.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025816436.10.0homeobox-leucine zipper protein HOX29-like
SwissprotA2WLR50.0HOX29_ORYSI; Homeobox-leucine zipper protein HOX29
TrEMBLA0A2S3HYQ00.0A0A2S3HYQ0_9POAL; Uncharacterized protein
STRINGPavir.J31448.1.p0.0(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP37438197
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G52150.10.0HD-ZIP family protein