PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.5KG043800.1.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family BES1
Protein Properties Length: 345aa    MW: 36293.8 Da    PI: 8.8231
Description BES1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.5KG043800.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF822207.53.7e-64151571145
               DUF822   1 ggsgrkptwkErEnnkrRERrRRaiaakiyaGLRaqGnyklpkraDnneVlkALcreAGwvvedDGttyrkgskpleeaeaagssasasp 90 
                          +g+gr+ptw+ErEnnkrRERrRRaiaaki++GLRa+G+yklpk++DnneVlkALc+eAGwvve+DGttyrkgskp+e+++a+g+s s sp
  Pavir.5KG043800.1.p  15 AGAGRMPTWRERENNKRRERRRRAIAAKIFSGLRAHGGYKLPKHCDNNEVLKALCNEAGWVVEPDGTTYRKGSKPQERMDAIGCSVSPSP 104
                          589*************************************************************************************** PP

               DUF822  91 esslqsslkssalaspvesysaspksssfpspssldsislasa......asllpvlsvlsl 145
                          +ss+q         sp++sy+asp+sssfps +s+ +++ ++       + +lp+l++ s+
  Pavir.5KG043800.1.p 105 CSSYQ--------LSPRASYNASPTSSSFPSGASSPFLPPNEMangidgNPILPWLKTFSN 157
                          *****........788888888888888888888777766555556666888888888776 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF056871.0E-6216155IPR008540BES1/BZR1 plant transcription factor, N-terminal
Sequence ? help Back to Top
Protein Sequence    Length: 345 aa     Download sequence    Send to blast
MASGGGGGGG ALGVAGAGRM PTWRERENNK RRERRRRAIA AKIFSGLRAH GGYKLPKHCD  60
NNEVLKALCN EAGWVVEPDG TTYRKGSKPQ ERMDAIGCSV SPSPCSSYQL SPRASYNASP  120
TSSSFPSGAS SPFLPPNEMA NGIDGNPILP WLKTFSNGTP SKKHPLLPPL LIHGGSISAP  180
VTPPLSSPSA RTPRMKTDWD ESAIQPPWHG ANSPSIVNST PPSPGRSMAP DPAWLAGIQI  240
SSTSPNSPTF SLVSTNPFSV FKESIPVVNS SRMCTPGQSG TCSPAIPGMP RPSDVHMMDA  300
ISDEFAFGSS TNGAQQAPGL VRAWEGERIH DDSGSDDLEL TLKL*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5zd4_A6e-231989372442Maltose-binding periplasmic protein,Protein BRASSINAZOLE-RESISTANT 1
5zd4_B6e-231989372442Maltose-binding periplasmic protein,Protein BRASSINAZOLE-RESISTANT 1
5zd4_C6e-231989372442Maltose-binding periplasmic protein,Protein BRASSINAZOLE-RESISTANT 1
5zd4_D6e-231989372442Maltose-binding periplasmic protein,Protein BRASSINAZOLE-RESISTANT 1
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Pvr.24210.0callus| leaf| root| stem
Functional Description ? help Back to Top
Source Description
UniProtMay function in brassinosteroid signaling. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.5KG043800.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025817932.10.0protein BZR1 homolog 2
SwissprotQ0JPT41e-163BZR2_ORYSJ; Protein BZR1 homolog 2
TrEMBLA0A2T7DSL20.0A0A2T7DSL2_9POAL; Uncharacterized protein
STRINGPavir.Ea00221.1.p0.0(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP136638112
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G78700.12e-88BES1/BZR1 homolog 4
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]