PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.5KG020200.1.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family ERF
Protein Properties Length: 370aa    MW: 39394.7 Da    PI: 4.5258
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.5KG020200.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP262.78e-20122172155
                  AP2   1 sgykGVrwdkkrgrWvAeIrd.psengkr.krfslgkfgtaeeAakaaiaarkkleg 55 
                          ++++GVr+++ +g+++AeIrd +     r  r++lg+f+taeeAak ++ a+ +l+g
  Pavir.5KG020200.1.p 122 PRFRGVRRRP-WGKYAAEIRDpW-----RrVRVWLGTFDTAEEAAKVYDSAAIQLRG 172
                          689*******.**********88.....55*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000183.34E-28122182No hitNo description
PfamPF008472.9E-12122172IPR001471AP2/ERF domain
SMARTSM003803.7E-34123186IPR001471AP2/ERF domain
PROSITE profilePS5103223.301123180IPR001471AP2/ERF domain
SuperFamilySSF541719.15E-21123180IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.104.9E-29123181IPR001471AP2/ERF domain
PRINTSPR003674.9E-10124135IPR001471AP2/ERF domain
PRINTSPR003674.9E-10146162IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 370 aa     Download sequence    Send to blast
MWALEEEMFV AVRRTEHVEV TSRAVEAAPA KESAAPGPRT VRVFCDDYDA TDSSGDDDDA  60
GAAARRRVKR YVQEIRLERA VKEAPPARPA ASPAAPAAAR VKLVLPGRKR KADGAGAGAA  120
EPRFRGVRRR PWGKYAAEIR DPWRRVRVWL GTFDTAEEAA KVYDSAAIQL RGPDATTNFE  180
QVDDAALAVP AEVAERLPQP PQAAASKNAS SSATSYDSGE ESHAAAASPT SVLRSFPASG  240
VANDTCSKKP APAPAPAAPA PLPASRAPET DESSGVVFRC PFSSADGFAG EFPPMYTDFD  300
LLADFPEPSL DFLADIPEEP LSLPFFSAAT TTTSSESSSE PPSPARWQQV DDLFQDITDL  360
FQIDPLPVV*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A4e-21114179571Ethylene-responsive transcription factor ERF096
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Pvr.156950.0root| stem
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.5KG020200.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004967470.11e-172ethylene-responsive transcription factor CRF1
TrEMBLA0A1E5VYG91e-170A0A1E5VYG9_9POAL; Uncharacterized protein
TrEMBLA0A368R0311e-171A0A368R031_SETIT; Uncharacterized protein
STRINGPavir.Ea00119.1.p0.0(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP16903697
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G23750.22e-28cytokinin response factor 2