PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pavir.5KG015400.1.p

Organism

Panicum virgatum

Taxonomic ID

38727

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum

Family

FAR1

Protein Properties

Length: 165aa MW: 18677.1 Da PI: 9.3005

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pavir.5KG015400.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	52.2	2e-16	31	110	1	90
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHela 90 +fYn Y+ e+GF +r + +++ ++g+ t+++ vC +eg +++ + + r+gCka++++ ++ d+ w v++++++H H+la Pavir.5KG015400.1.p 31 EFYNMYSWEIGFGIRHGRCRQN-KSGRRTMQDIVCACEGAGDRSGGS---------TVRCGCKAMIRLLRQPDDSWAVSRFVSHHCHSLA 110 6***************9999.677799*******9998877.........99***************************996 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	4.8E-13	31	110	IPR004330	FAR1 DNA binding domain

Sequence ? help Back to Top
Protein Sequence Length: 165 aa Download sequence Send to blast
RALRGCGNRG DRCIFEPEVG KVFESTEEAF EFYNMYSWEI GFGIRHGRCR QNKSGRRTMQ 60 DIVCACEGAG DRSGGSTVRC GCKAMIRLLR QPDDSWAVSR FVSHHCHSLA ASEGERRKWN 120 SHSRIDQMSR DLVMHLRNNN VQISRVCSIV GSLHVNLGRH SRLH*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Pavir.5KG015400.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_025822596.1	3e-49	protein FAR1-RELATED SEQUENCE 5-like isoform X1
Refseq	XP_025822597.1	3e-49	protein FAR1-RELATED SEQUENCE 5-like isoform X1
TrEMBL	A0A1B6Q0S6	4e-44	A0A1B6Q0S6_SORBI; Uncharacterized protein
STRING	Pavir.J11137.1.p	1e-117	(Panicum virgatum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP619	19	91

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G43280.1	1e-14	FAR1 family protein

Link Out ? help Back to Top
Phytozome	Pavir.5KG015400.1.p