PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pavir.5KG011600.7.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
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Family | bHLH | ||||||||
Protein Properties | Length: 341aa MW: 35873.7 Da PI: 5.0282 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 11.6 | 0.00051 | 195 | 232 | 12 | 54 |
HHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 12 RRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 R +r+ +++ L +++ + +K + a++L++++ YI+ L Pavir.5KG011600.7.p 195 RKERLGDRITALHQIVSPF-----GKTDTASVLQETISYISFL 232 6678889999999999998.....8***************987 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50888 | 11.884 | 183 | 232 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 2.83E-5 | 193 | 237 | No hit | No description |
SuperFamily | SSF47459 | 3.27E-9 | 193 | 243 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 2.9E-5 | 193 | 239 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 341 aa Download sequence Send to blast |
MMGGGEFKSS LLQQMMWSGG TDSKNMMSSL MPCAEEQEAS NKMPPLSSSS MLLPQHLLQI 60 SSDLAPDEVN ASTATSLASS DLHDGRESNM PESWSQLLLG GLVGDHERYS AATALRSKGL 120 EGPPNMPQAA AAYNLYGHGG GEEIQTSGTN KSQAPEVKNH HSDNSSDGNS TASGSAPKKA 180 RVQTSSSAQS TLKVRKERLG DRITALHQIV SPFGKTDTAS VLQETISYIS FLLSQIEVLS 240 LPYLGGHGNG NSMQQHHTVA SLLNRSTSNG MAEAEASTEQ QEINNNGGGD DEEGSTKDLR 300 GRGLCLVPVS CTSHLAGDDS DFWAVAAAPP PPPPLGIVWR * |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Pvr.25824 | 0.0 | root |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Pavir.5KG011600.7.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | BT033720 | 1e-104 | BT033720.1 Zea mays full-length cDNA clone ZM_BFc0123B16 mRNA, complete cds. | |||
GenBank | BT040317 | 1e-104 | BT040317.1 Zea mays full-length cDNA clone ZM_BFc0080O08 mRNA, complete cds. | |||
GenBank | BT041419 | 1e-104 | BT041419.1 Zea mays full-length cDNA clone ZM_BFc0163C07 mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004967407.1 | 1e-175 | transcription factor bHLH68 isoform X1 | ||||
TrEMBL | A0A3L6SJ64 | 1e-179 | A0A3L6SJ64_PANMI; Transcription factor bHLH68-like isoform X1 | ||||
STRING | Pavir.Ea00082.1.p | 0.0 | (Panicum virgatum) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G29100.1 | 2e-38 | bHLH family protein |
Link Out ? help Back to Top | |
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Phytozome | Pavir.5KG011600.7.p |