PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.5KG011600.12.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family bHLH
Protein Properties Length: 295aa    MW: 31123 Da    PI: 6.6749
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.5KG011600.12.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH11.90.000421812181254
                           HHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
                   HLH  12 RRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                           R +r+ +++  L +++ +      +K + a++L++++ YI+ L
  Pavir.5KG011600.12.p 181 RKERLGDRITALHQIVSPF-----GKTDTASVLQETISYISFL 218
                           6678889999999999998.....8***************987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088811.884169218IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000832.17E-5179223No hitNo description
SuperFamilySSF474592.49E-9179229IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.102.3E-5179225IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 295 aa     Download sequence    Send to blast
MMGGGEFKSS LLQQMMWSGG TDSKNMMSSL MPCAEEQEAS NKMPPLSSSS MLLPQHLLQI  60
SSDLAPDEVN ASTATSLASS DLHDGRESNM PESWSQLLLG GLVGDHERYS AATALRSKGL  120
EGPPNMPQAA AAYNLYGHGG GEEIQTSGTN KSQGNSTASG SAPKKARVQT SSSAQSTLKV  180
RKERLGDRIT ALHQIVSPFG KTDTASVLQE TISYISFLLS QIEVLSLPYL GGHGNGNSMQ  240
QHHTVASVSP PLLSLSLSLS LSLSLSLSLS LSLPLSHIHR DTAYCIGTSY VCRN*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Pvr.258240.0root
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.5KG011600.12.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0337203e-89BT033720.1 Zea mays full-length cDNA clone ZM_BFc0123B16 mRNA, complete cds.
GenBankBT0403173e-89BT040317.1 Zea mays full-length cDNA clone ZM_BFc0080O08 mRNA, complete cds.
GenBankBT0414193e-89BT041419.1 Zea mays full-length cDNA clone ZM_BFc0163C07 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025818136.11e-138transcription factor bHLH133-like isoform X3
TrEMBLA0A2T7DTC51e-137A0A2T7DTC5_9POAL; Uncharacterized protein
STRINGPavir.Ea00082.1.p1e-166(Panicum virgatum)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G29100.11e-29bHLH family protein