PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.5KG011600.1.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family bHLH
Protein Properties Length: 373aa    MW: 39260.5 Da    PI: 4.9343
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.5KG011600.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH11.50.000582262631254
                          HHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
                  HLH  12 RRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                          R +r+ +++  L +++ +      +K + a++L++++ YI+ L
  Pavir.5KG011600.1.p 226 RKERLGDRITALHQIVSPF-----GKTDTASVLQETISYISFL 263
                          6678889999999999998.....8***************987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088811.884214263IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474593.66E-9224274IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.103.3E-5224270IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000833.30E-5224268No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 373 aa     Download sequence    Send to blast
MMGGGEFKSS LLQQMMWSGG TDSKNMMSSL MPCAEEQEAS NKMPPLSSSS MLLPQHLLQI  60
SSDLAPDEVN ASTATSLASS DLHDGRESNM PESWSQLLLG GLVGDHERYS AATALRSKGL  120
EGPPNMPQAA AAYNLYGHGG GEEIQTSGTN KSQVSQMLLA SSPRSCITTS LGSNMLDFSN  180
STVQAPEVKN HHSDNSSDGN STASGSAPKK ARVQTSSSAQ STLKVRKERL GDRITALHQI  240
VSPFGKTDTA SVLQETISYI SFLLSQIEVL SLPYLGGHGN GNSMQQHHTV ASLLNRSTSN  300
GMAEAEASTE QQEEINNNGG GDDEEGSTKD LRGRGLCLVP VSCTSHLAGD DSDFWAVAAA  360
PPPPPPLGIV WR*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Pvr.258240.0root
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.5KG011600.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0337201e-141BT033720.1 Zea mays full-length cDNA clone ZM_BFc0123B16 mRNA, complete cds.
GenBankBT0403171e-141BT040317.1 Zea mays full-length cDNA clone ZM_BFc0080O08 mRNA, complete cds.
GenBankBT0414191e-141BT041419.1 Zea mays full-length cDNA clone ZM_BFc0163C07 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004967407.10.0transcription factor bHLH68 isoform X1
TrEMBLA0A3L6SJ640.0A0A3L6SJ64_PANMI; Transcription factor bHLH68-like isoform X1
STRINGPavir.Ea00082.1.p0.0(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP2167817
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G29100.15e-38bHLH family protein