PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.5KG010700.3.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family MYB
Protein Properties Length: 793aa    MW: 86771.7 Da    PI: 5.4558
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.5KG010700.3.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding54.92e-175096148
                         TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
      Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                         +g+W +eEd +l +av+ + g++Wk+Ia++++  Rt+ qc +rwqk+l
  Pavir.5KG010700.3.p 50 KGNWKPEEDAILSRAVQTYQGKNWKKIAECFP-DRTDVQCLHRWQKVL 96
                         79******************************.************986 PP
2Myb_DNA-binding62.49.1e-20102148148
                          TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
      Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                          +g+W++eEde++v+ v+++G++ W+tIa+ ++ gR +kqc++rw+++l
  Pavir.5KG010700.3.p 102 KGPWSKEEDEIIVQMVNKYGPKKWSTIAQALP-GRIGKQCRERWHNHL 148
                          79******************************.*************97 PP
3Myb_DNA-binding47.63.9e-15154196145
                          TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHH CS
      Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwq 45 
                          + +WT+eE+  l++a++++G++ W+   + ++ gRt++ +k++w+
  Pavir.5KG010700.3.p 154 KEAWTQEEEITLIHAHRMYGNK-WAELTKFLP-GRTDNAIKNHWN 196
                          579*******************.*********.***********8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129415.7224596IPR017930Myb domain
SuperFamilySSF466893.59E-1848110IPR009057Homeodomain-like
SMARTSM007178.4E-164998IPR001005SANT/Myb domain
PfamPF002497.7E-155096IPR001005SANT/Myb domain
CDDcd001671.02E-135296No hitNo description
Gene3DG3DSA:1.10.10.602.4E-2352108IPR009057Homeodomain-like
PROSITE profilePS5129431.9297152IPR017930Myb domain
SuperFamilySSF466891.76E-3199195IPR009057Homeodomain-like
SMARTSM007171.5E-18101150IPR001005SANT/Myb domain
CDDcd001672.09E-16104148No hitNo description
PfamPF139212.3E-18105165No hitNo description
Gene3DG3DSA:1.10.10.603.9E-27109151IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.605.8E-21152203IPR009057Homeodomain-like
PROSITE profilePS5129419.654153203IPR017930Myb domain
SMARTSM007174.4E-14153201IPR001005SANT/Myb domain
CDDcd001675.19E-11156196No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003713Molecular Functiontranscription coactivator activity
Sequence ? help Back to Top
Protein Sequence    Length: 793 aa     Download sequence    Send to blast
MASDKAKVAK KGGEDPGPPP ASREGENSHE PQRQRSLNGR TTGPTRRSTK GNWKPEEDAI  60
LSRAVQTYQG KNWKKIAECF PDRTDVQCLH RWQKVLNPEL VKGPWSKEED EIIVQMVNKY  120
GPKKWSTIAQ ALPGRIGKQC RERWHNHLNP AINKEAWTQE EEITLIHAHR MYGNKWAELT  180
KFLPGRTDNA IKNHWNSSVK KKVDSYISSG LLSQVPCLPV IECPAQCNSL SALNLQNNGD  240
SGCNAHNTNV ALSCELQVNV DANKGEAHDS HSSMCQVACY TSIEAVGSAL PDGHHHLSSS  300
FSQRMDLQMD VNEGSGDTID GDSSSGLNQP PDTSETDTNF LAQPYTLHTS NPSSMMETVY  360
EQSTLATISP SFISLDGLSD APENRSEPIE MRDSEAEIIT CSNNSFCDAE QSVKPGSSDD  420
RPGAFTMTES ITNCKSQQST DAEEPVASTV KEQLPKDMDI GPDEKKGEGA LFYEPPRFPG  480
LDVPFISCDL VTSADMQEFS PLGIRQWMRS TMNVPTPLRL WGSPTHDESP GVLKSAAESF  540
PCTPSIMKKR QRGLLSPTPD KRIEKKSGIA KEMTDISYMI AATCSMNATK DEATAPESVA  600
CAEQHLDEKL KFSDGNRENF NGAPEQARDA QNGGNKQGGQ HCSSLNVANP NTDLPDNLQP  660
VGVLVEHNCN DIIAADHGAK PESLSSCKEA VSSKPKPAEL VVEKSSPCIN ANYEYVNLLA  720
DTPGVKKGLE SPSAWKSPWY IDMHMHFQAE ARVLDFDEYS TPAKAADKRL GSCLGRSVSS  780
PILSSPNLRS FR*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1h88_C1e-66502036159MYB PROTO-ONCOGENE PROTEIN
1h89_C1e-66502036159MYB PROTO-ONCOGENE PROTEIN
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Pvr.184430.0stem
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00466DAPTransfer from AT4G32730Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.5KG010700.3.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025814765.10.0transcription factor MYB3R-1-like
TrEMBLA0A2T7DT930.0A0A2T7DT93_9POAL; Uncharacterized protein
STRINGPavir.Ea00087.1.p0.0(Panicum virgatum)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G32730.11e-104Homeodomain-like protein