PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pavir.5KG010700.2.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
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Family | MYB | ||||||||
Protein Properties | Length: 857aa MW: 93711.5 Da PI: 5.5656 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 54.8 | 2.2e-17 | 50 | 96 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+W +eEd +l +av+ + g++Wk+Ia++++ Rt+ qc +rwqk+l Pavir.5KG010700.2.p 50 KGNWKPEEDAILSRAVQTYQGKNWKKIAECFP-DRTDVQCLHRWQKVL 96 79******************************.************986 PP | |||||||
2 | Myb_DNA-binding | 62.3 | 1e-19 | 102 | 148 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+W++eEde++v+ v+++G++ W+tIa+ ++ gR +kqc++rw+++l Pavir.5KG010700.2.p 102 KGPWSKEEDEIIVQMVNKYGPKKWSTIAQALP-GRIGKQCRERWHNHL 148 79******************************.*************97 PP | |||||||
3 | Myb_DNA-binding | 47.4 | 4.3e-15 | 154 | 196 | 1 | 45 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwq 45 + +WT+eE+ l++a++++G++ W+ + ++ gRt++ +k++w+ Pavir.5KG010700.2.p 154 KEAWTQEEEITLIHAHRMYGNK-WAELTKFLP-GRTDNAIKNHWN 196 579*******************.*********.***********8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 15.722 | 45 | 96 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 3.95E-18 | 48 | 110 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 8.4E-16 | 49 | 98 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 8.5E-15 | 50 | 96 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 2.7E-23 | 52 | 108 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 1.15E-13 | 52 | 96 | No hit | No description |
PROSITE profile | PS51294 | 31.92 | 97 | 152 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 1.98E-31 | 99 | 195 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 1.5E-18 | 101 | 150 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 2.37E-16 | 104 | 148 | No hit | No description |
Pfam | PF13921 | 2.6E-18 | 105 | 165 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 4.3E-27 | 109 | 151 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 6.4E-21 | 152 | 203 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 19.654 | 153 | 203 | IPR017930 | Myb domain |
SMART | SM00717 | 4.4E-14 | 153 | 201 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 5.80E-11 | 156 | 196 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003713 | Molecular Function | transcription coactivator activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 857 aa Download sequence Send to blast |
MASDKAKVAK KGGEDPGPPP ASREGENSHE PQRQRSLNGR TTGPTRRSTK GNWKPEEDAI 60 LSRAVQTYQG KNWKKIAECF PDRTDVQCLH RWQKVLNPEL VKGPWSKEED EIIVQMVNKY 120 GPKKWSTIAQ ALPGRIGKQC RERWHNHLNP AINKEAWTQE EEITLIHAHR MYGNKWAELT 180 KFLPGRTDNA IKNHWNSSVK KKVDSYISSG LLSQVPCLPV IECPAQCNSL SALNLQNNGD 240 SGCNAHNTNV ALSCELQVNV DANKGEAHDS HSSMCQVACY TSIEAVGSAL PDGHHHLSSS 300 FSQRMDLQMD VNEGSGDTID GDSSSGLNQP PDTSETDTNF LAQPYTLHTS NPSSMMETVY 360 EQSTLATISP SFISLDGLSD APENRSEPIE MRDSEAEIIT CSNNSFCDAE QSVKPGSSDD 420 RPGAFTMTES ITNCKSQQST DAEEPVASTV KEQLPKDMDI GPDEKKGEGA LFYEPPRFPG 480 LDVPFISCDL VTSADMQEFS PLGIRQWMRS TMNVPTPLRL WGSPTHDESP GVLKSAAESF 540 PCTPSIMKKR QRGLLSPTPD KRIEKKSGIA KEMTDISYMI AATCSMNATK DEATAPESVA 600 CAEQHLDEKL KFSDGNRENF NGAPEQARDA QNGGNKQGGQ HCSSLNVANP NTDLPDNLQP 660 VGVLVEHNCN DIIAADHGAK PESLSSCKEA VSSKPKPAEL VVEKSSPCIN ANYEYVNLLA 720 DTPGVKKGLE SPSAWKSPWY IDMHMHFQGF VSPADRTYDA LGLVKQISKQ SAAAAVEACE 780 VLASGSRIFD KENKENRDDK EPGTRKSQTK IMAEARVLDF DEYSTPAKAA DKRLGSCLGR 840 SVSSPILSSP NLRSFR* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1h88_C | 2e-66 | 50 | 203 | 6 | 159 | MYB PROTO-ONCOGENE PROTEIN |
1h89_C | 2e-66 | 50 | 203 | 6 | 159 | MYB PROTO-ONCOGENE PROTEIN |
Search in ModeBase |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Pvr.18443 | 0.0 | stem |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00466 | DAP | Transfer from AT4G32730 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Pavir.5KG010700.2.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_025814765.1 | 0.0 | transcription factor MYB3R-1-like | ||||
TrEMBL | A0A2T7DT93 | 0.0 | A0A2T7DT93_9POAL; Uncharacterized protein | ||||
STRING | Pavir.Ea00087.1.p | 0.0 | (Panicum virgatum) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G32730.1 | 1e-103 | Homeodomain-like protein |
Link Out ? help Back to Top | |
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Phytozome | Pavir.5KG010700.2.p |