PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pavir.5KG006600.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
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Family | ARF | ||||||||
Protein Properties | Length: 688aa MW: 76552.6 Da PI: 5.6556 | ||||||||
Description | ARF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 70.6 | 2e-22 | 116 | 216 | 1 | 98 |
EEEE-..-HHHHTT-EE--HHH.HTT......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkl 84 f+k+ltpsd++++g +++ +++a+e+ +++ + +++l+ +d++g +W++k+iyr++++r++lt+GW+ Fv +++L +gD +v Pavir.5KG006600.1.p 116 FCKILTPSDTSTHGGFSVLRRHANEClppldmSMP-TPTQELITKDLHGSEWRFKHIYRGQPRRHLLTTGWSTFVTSKKLIAGDAFVYL- 203 99****************************96444.45569999******************************************999. PP -SSSEE..EEEEE- CS B3 85 dgrsefelvvkvfr 98 +++++e +v+v+r Pavir.5KG006600.1.p 204 -RSETGEQRVGVRR 216 .4477778999997 PP | |||||||
2 | Auxin_resp | 92.5 | 7.2e-31 | 242 | 323 | 1 | 83 |
Auxin_resp 1 aahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsLk 83 a+ha++t+s+F v+Y+Pr s+s+++v+++k+++a k+ + vG Rfkm+fe+ed + +++sGtvv+ dl+p +W++S+W+ Lk Pavir.5KG006600.1.p 242 ASHAIKTNSIFLVYYRPRLSQSQYIVSLNKYLEASKIGFKVGVRFKMSFEGEDIPVKKFSGTVVDKGDLSP-QWQGSQWKTLK 323 789********************************************************************.********996 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101936 | 4.45E-37 | 106 | 245 | IPR015300 | DNA-binding pseudobarrel domain |
Gene3D | G3DSA:2.40.330.10 | 4.2E-36 | 109 | 231 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 2.87E-17 | 114 | 216 | No hit | No description |
SMART | SM01019 | 9.9E-18 | 116 | 218 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 2.9E-20 | 116 | 216 | IPR003340 | B3 DNA binding domain |
PROSITE profile | PS50863 | 11.251 | 116 | 218 | IPR003340 | B3 DNA binding domain |
Pfam | PF06507 | 7.5E-27 | 242 | 323 | IPR010525 | Auxin response factor |
Pfam | PF02309 | 9.4E-6 | 578 | 625 | IPR033389 | AUX/IAA domain |
PROSITE profile | PS51745 | 19.817 | 589 | 671 | IPR000270 | PB1 domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0009725 | Biological Process | response to hormone | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0005515 | Molecular Function | protein binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 688 aa Download sequence Send to blast |
MAQGREPELF AELWRACAGP LVELPQTGER VFYFLQGHLE QLQEATDPAL LAEQIKMFQV 60 PNKILCKVVN VELKAETETD EMFAQITLQP DPDQVNLPTL PDPPLPETPR PVVHSFCKIL 120 TPSDTSTHGG FSVLRRHANE CLPPLDMSMP TPTQELITKD LHGSEWRFKH IYRGQPRRHL 180 LTTGWSTFVT SKKLIAGDAF VYLRSETGEQ RVGVRRLVQK QSTMPASVIS SQSMHLGVLA 240 SASHAIKTNS IFLVYYRPRL SQSQYIVSLN KYLEASKIGF KVGVRFKMSF EGEDIPVKKF 300 SGTVVDKGDL SPQWQGSQWK TLKVQWDEAT NFNGPDRVSS WEIEQFDASA PTINIPVQPS 360 MKNKRPRETA EGLDIQAMEP TQEFWLSGIS EQHEKTGIGS SEPNCISGHQ VVWTSERAGY 420 SAMSSSVCQS SVVLGNWFKD YNSSSKGGSP SLSEISQKLF QVTSNDARVP PWPGLSAYQA 480 EEPSSKLSCN TALCSYQTEE VAPNLSNAIE EKKEPCMFRL FGVNLINHTK ISATTDKMTM 540 GVGEVSTQAA GSFEDSGQLS ALSKGIKDHT QVLNESPREI QSHQSCTGRT RIKVQMHGNA 600 VGRAVDLANL DGYPQLIGEL EEMFEIKDLS LKEKWKVAFS NDDGDTMEVG DVPWLEFCLK 660 VRKIVIHSTE DERDMDPCPE QDVKTGF* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
4ldv_A | 1e-147 | 9 | 348 | 19 | 357 | Auxin response factor 1 |
4ldw_A | 1e-147 | 9 | 348 | 19 | 357 | Auxin response factor 1 |
4ldw_B | 1e-147 | 9 | 348 | 19 | 357 | Auxin response factor 1 |
4ldx_A | 1e-147 | 9 | 353 | 19 | 362 | Auxin response factor 1 |
4ldx_B | 1e-147 | 9 | 353 | 19 | 362 | Auxin response factor 1 |
Search in ModeBase |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Pvr.16874 | 0.0 | callus| leaf| root| stem |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Expressed in roots, culms, leaves and young panicles. {ECO:0000269|PubMed:17408882}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Auxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs). |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Pavir.5KG006600.1.p |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By auxin under light or dark conditions. {ECO:0000269|PubMed:17408882}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_025816439.1 | 0.0 | auxin response factor 1-like | ||||
Swissprot | Q5NB85 | 0.0 | ARFA_ORYSJ; Auxin response factor 1 | ||||
TrEMBL | A0A2T7DTH3 | 0.0 | A0A2T7DTH3_9POAL; Auxin response factor | ||||
STRING | Pavir.Ea00026.1.p | 0.0 | (Panicum virgatum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP1082 | 36 | 116 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G23980.1 | 1e-178 | auxin response factor 9 |
Link Out ? help Back to Top | |
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Phytozome | Pavir.5KG006600.1.p |
Publications ? help Back to Top | |||
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