PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pavir.5KG006100.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
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Family | bHLH | ||||||||
Protein Properties | Length: 647aa MW: 70343.9 Da PI: 7.2711 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 39.2 | 1.2e-12 | 491 | 537 | 4 | 55 |
HHHHHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHHH CS HLH 4 ahnerErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksLq 55 +h e+Er+RR+++N++f Lr ++P+ + K++Ka+ L A+ YI +Lq Pavir.5KG006100.1.p 491 NHVEAERQRREKLNQRFYALRAVVPNiS------KMDKASLLGDAITYITDLQ 537 799***********************66......*****************99 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF14215 | 9.1E-51 | 85 | 270 | IPR025610 | Transcription factor MYC/MYB N-terminal |
PROSITE profile | PS50888 | 16.831 | 487 | 536 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 5.22E-15 | 490 | 541 | No hit | No description |
SuperFamily | SSF47459 | 9.29E-19 | 490 | 554 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 2.7E-18 | 491 | 550 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 4.0E-10 | 491 | 537 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 2.6E-16 | 493 | 542 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0044212 | Molecular Function | transcription regulatory region DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 647 aa Download sequence Send to blast |
MEGIVVITSY YSIDLKAMKV ICTVIMVMKM EMEDDGAVGG TGGTWTEEDR ALGAAVLGTD 60 AFAYLTKGGG AISEGLVAAS LPDDLQNKLQ ELVESEGPGT GWNYAIFWQL SRTKSGDLVL 120 GWGDGSCREP RDGEVGAAAS AGSDDTKQRM RKRVLQRLHI AFGVADEEDY APGIDQVTDT 180 EMFFLASMYF AFPRRAGGPG QVFAAGIPLW IPNNERKVFP ANYCYRGFLA NMAGFRTIVL 240 VPFESGVLEL GSMQHIAESS DTIQTIRSVF TGAGGNKAAV QRHEGNGPTP PERSPGLAKI 300 FGKDLNLGRP SAVPAVGVSK VDERSWEQRA AAAGGTSLLP NVQKGLQNFT WSQARGLNSH 360 QQKFGNGVLI VSNEAAHRSN GAADSPSATQ FQLQKVPQLP KLQLQKLPHI QKTPQLVNQQ 420 PLQPQVPRQI DFSAGSSSKS GVLVTRAAVL DGESAEVDGL CKEEGPPPVI EDRRPRKRGR 480 KPANGREEPL NHVEAERQRR EKLNQRFYAL RAVVPNISKM DKASLLGDAI TYITDLQKKL 540 KDMETERERL LESGMVDPRE RGAPRPEVDI QVVQDEVLVR VMSPMESHPV KKVFQAFEEA 600 EVRVGESKVT GNNNGTVVHS FIIKCPGTEQ QTREKVIAAM SRVMSS* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5gnj_A | 7e-28 | 485 | 547 | 2 | 64 | Transcription factor MYC2 |
5gnj_B | 7e-28 | 485 | 547 | 2 | 64 | Transcription factor MYC2 |
5gnj_E | 7e-28 | 485 | 547 | 2 | 64 | Transcription factor MYC2 |
5gnj_F | 7e-28 | 485 | 547 | 2 | 64 | Transcription factor MYC2 |
5gnj_G | 7e-28 | 485 | 547 | 2 | 64 | Transcription factor MYC2 |
5gnj_I | 7e-28 | 485 | 547 | 2 | 64 | Transcription factor MYC2 |
5gnj_M | 7e-28 | 485 | 547 | 2 | 64 | Transcription factor MYC2 |
5gnj_N | 7e-28 | 485 | 547 | 2 | 64 | Transcription factor MYC2 |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 472 | 480 | RRPRKRGRK |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Pvr.20750 | 0.0 | callus| leaf| stem |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00100 | PBM | Transfer from AT1G01260 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Pavir.5KG006100.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_025816895.1 | 0.0 | transcription factor bHLH13-like | ||||
TrEMBL | A0A3L6SNM9 | 0.0 | A0A3L6SNM9_PANMI; Transcription factor bHLH13-like | ||||
STRING | Pavir.Ea00030.1.p | 0.0 | (Panicum virgatum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP5174 | 38 | 60 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G01260.3 | 7e-71 | bHLH family protein |
Link Out ? help Back to Top | |
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Phytozome | Pavir.5KG006100.1.p |