PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pavir.5KG004200.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
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Family | NAC | ||||||||
Protein Properties | Length: 207aa MW: 22080.8 Da PI: 7.2213 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 49.1 | 1.9e-15 | 12 | 104 | 1 | 90 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp.kkvkaeekewyfFskrdkkyatgkrknratk....sgyWka 85 lpp ++F+Ptd ++v +yL +++ g++++ ++++ ++d +++ Pw+L ++ +a++++ +fF ++ k+ ++r++r++ g+W+ Pavir.5KG004200.1.p 12 LPPACKFDPTDADIVAYYLLPRAVGHSNPHAHAVIDADPCSCPPWELMrRHGHAGSDHAFFFGPTTKHG--SHRASRTVPagegGGTWHG 99 799********************999999989999************8334445666889999988765..4677776433344899**8 PP NAM 86 tgkdk 90 + +d+ Pavir.5KG004200.1.p 100 QTSDE 104 87765 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 6.15E-19 | 9 | 104 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 14.537 | 12 | 162 | IPR003441 | NAC domain |
Pfam | PF02365 | 6.6E-9 | 13 | 104 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 207 aa Download sequence Send to blast |
MEASRFGFDP SLPPACKFDP TDADIVAYYL LPRAVGHSNP HAHAVIDADP CSCPPWELMR 60 RHGHAGSDHA FFFGPTTKHG SHRASRTVPA GEGGGTWHGQ TSDETGLVLY MITDPLLPVP 120 GAVISRVRMD AKAKKKLQQP APAADNNGGF MGEAAGCKSA LVNTGEGGCL CSPQCWRDGC 180 YVNSSKVSFN EDTNYDRGQN RRLLPS* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Pavir.5KG004200.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004980219.1 | 6e-47 | NAC domain-containing protein 18 | ||||
Refseq | XP_012703557.1 | 7e-46 | NAC domain-containing protein 101 | ||||
TrEMBL | A0A3L6QZ89 | 1e-102 | A0A3L6QZ89_PANMI; NAC domain-containing protein 18-like | ||||
STRING | Pavir.J22451.1.p | 3e-75 | (Panicum virgatum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP14301 | 19 | 26 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G54330.1 | 3e-09 | NAC domain containing protein 20 |
Link Out ? help Back to Top | |
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Phytozome | Pavir.5KG004200.1.p |