PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.4NG342400.1.p
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family NAC
Protein Properties Length: 331aa    MW: 37709.6 Da    PI: 9.0787
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.4NG342400.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM145.72.4e-45411723128
                  NAM   3 pGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp.kkvkaeekewyfFskrdkkya....tgkrknratksgyWkatg 87 
                          pGfrFhPt+eel+ +yLk+ ++gkkl++ ++i++v++y+++Pw+Lp  +   +e+ewyfF++rd+k++     g r++r+t++g+Wkatg
  Pavir.4NG342400.1.p  41 PGFRFHPTEEELLEFYLKQVAQGKKLKF-DIIPTVQLYRHDPWELPgLARIVGEREWYFFVPRDRKHHqagaAGGRPSRTTERGFWKATG 129
                          9**************************9.99***************533335789**********9985555577*************** PP

                  NAM  88 kdkevlsk..kgelvglkktLvfykgrapkgektdWvmheyrl 128
                          +d++v ++   ++l+glkktLv+y+grap+g+ktdWvm+eyrl
  Pavir.4NG342400.1.p 130 SDRAVRCAadPKRLIGLKKTLVYYEGRAPRGTKTDWVMNEYRL 172
                          ******98777788***************************98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019413.14E-5332197IPR003441NAC domain
PROSITE profilePS5100553.40939197IPR003441NAC domain
PfamPF023656.9E-2441172IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 331 aa     Download sequence    Send to blast
MYVLLARNHQ QQQQQQRRDR DREMDHQRRR GASTQEVDEL PGFRFHPTEE ELLEFYLKQV  60
AQGKKLKFDI IPTVQLYRHD PWELPGLARI VGEREWYFFV PRDRKHHQAG AAGGRPSRTT  120
ERGFWKATGS DRAVRCAADP KRLIGLKKTL VYYEGRAPRG TKTDWVMNEY RLPVHDDAAS  180
PPKNVQEDIV LCKVYRKAVS LKELEQRVAM EELARAASAS CTPSASGHND TAGSPTDDST  240
MSSSRSDHHQ AQQGETMMGV AIPPASVCRM KKEVMAESTT AVLRPATLSL PQLDVAKQQQ  300
EWMQDPFLTQ LRSPWMESWS PYFASSVLNF *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3ulx_A6e-45281974168Stress-induced transcription factor NAC1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator that binds sequence-specific DNA motifs. Involved in stress response. Plays a positive role in drought and salt stress tolerance through the modulation of abscisic acid-mediated signaling. {ECO:0000269|PubMed:26834774}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.4NG342400.1.p
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by drought stress, salt stress and abscisic acid (ABA). {ECO:0000269|PubMed:26834774}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU9676331e-161EU967633.1 Zea mays clone 304978 mRNA sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025811820.11e-157NAC domain-containing protein 22-like
SwissprotQ10S653e-99NAC22_ORYSJ; NAC domain-containing protein 22
TrEMBLA0A3L6PHH41e-163A0A3L6PHH4_PANMI; NAC domain-containing protein 67-like
STRINGPavir.J01198.1.p0.0(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP177038105
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G17040.14e-81NAC domain containing protein 36
Publications ? help Back to Top
  1. Hong Y,Zhang H,Huang L,Li D,Song F
    Overexpression of a Stress-Responsive NAC Transcription Factor Gene ONAC022 Improves Drought and Salt Tolerance in Rice.
    Front Plant Sci, 2016. 7: p. 4
    [PMID:26834774]