PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.4NG338700.5.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family MYB_related
Protein Properties Length: 438aa    MW: 47354.7 Da    PI: 6.0745
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.4NG338700.5.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding53.74.8e-1761105147
                          TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
      Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                          r +WT+eE+e++++a k++G   W+ I +++g ++t+ q++s+ qk+
  Pavir.4NG338700.5.p  61 REKWTEEEHEKFLEALKLYGRS-WRQIQEHIG-TKTAVQIRSHAQKF 105
                          789*****************55.*********.************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466896.58E-1655109IPR009057Homeodomain-like
PROSITE profilePS5129422.05656110IPR017930Myb domain
TIGRFAMsTIGR015577.0E-1659108IPR006447Myb domain, plants
SMARTSM007171.6E-1460108IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.2E-1061101IPR009057Homeodomain-like
PfamPF002491.2E-1461104IPR001005SANT/Myb domain
CDDcd001671.17E-1163106No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0007623Biological Processcircadian rhythm
GO:0009651Biological Processresponse to salt stress
GO:0009723Biological Processresponse to ethylene
GO:0009733Biological Processresponse to auxin
GO:0009737Biological Processresponse to abscisic acid
GO:0009739Biological Processresponse to gibberellin
GO:0009751Biological Processresponse to salicylic acid
GO:0009753Biological Processresponse to jasmonic acid
GO:0009845Biological Processseed germination
GO:0009909Biological Processregulation of flower development
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 438 aa     Download sequence    Send to blast
MASLALVEER DGLDSSGLPI DKRRPLDAAK SPLMDDAMQP KEGMDGYPVK VRKPYTITKQ  60
REKWTEEEHE KFLEALKLYG RSWRQIQEHI GTKTAVQIRS HAQKFFSKVV REPGASNIIE  120
IPPPRPKRKP LHPYPRKCAD SSTMANPAMG QPKLASISSS SGSDQENGSP VSVLSAMQSD  180
AFGSSVSNPS TGCTSPASSD DGNNVPSFVN EENLLTQQIE DDQSGQEIKL DNSDGDLSEE  240
DSSSGVQETS LKLFGKTVII PDTKKVCSSD GGCGDGEKRS QSSKQETSQA SSIGGIAAYP  300
AHNGWLLPYH SFQFHMGESG DAKISPLHVW WPYYGFPVSD PRGFGMGHIE GTCESDTDNK  360
SPSVESSSDC LSYVQTTAPT NCKVVKESLG GAIQVSEPAL SFELKPSANS AFVRVKPGSN  420
RGQSVRGFVP YKRCKVE*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Pvr.130240.0leaf| stem
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.4NG338700.5.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004966527.10.0uncharacterized protein LOC101785788
TrEMBLA0A2S3HG370.0A0A2S3HG37_9POAL; Uncharacterized protein
STRINGPavir.Db00044.1.p0.0(Panicum virgatum)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G37260.15e-42MYB_related family protein