PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pavir.4NG326900.1.p

Organism

Panicum virgatum

Taxonomic ID

38727

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum

Family

bZIP

Protein Properties

Length: 261aa MW: 28181.7 Da PI: 6.3605

Description

bZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pavir.4NG326900.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	bZIP_1	24.8	4.8e-08	92	136	8	52
HCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 8 rrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleel 52 +r NR A r++R++Kka ++ Lee+v L a N++L k+l++ Pavir.4NG326900.1.p 92 KRPSGNRAAVRKYREKKKAHTALLEEEVVHLRALNQQLMKKLQNH 136 56667**********************************999874 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00338	9.5E-7	80	152	IPR004827	Basic-leucine zipper domain
Gene3D	G3DSA:1.20.5.170	2.3E-12	83	153	No hit	No description
Pfam	PF07716	8.7E-15	86	142	IPR004827	Basic-leucine zipper domain
SuperFamily	SSF57959	7.5E-7	89	136	No hit	No description
CDD	cd14686	1.21E-11	97	144	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 261 aa Download sequence Send to blast
MDDGDLDFSN PDTFLCPAIG NDPPSSCSMD SYFDDILKDT EHHACTHTHT CNPPVHDNSH 60 THTCVHVHTK IVAASPDAAE TEESPSENNS KKRPSGNRAA VRKYREKKKA HTALLEEEVV 120 HLRALNQQLM KKLQNHAALE AEVARLRCLL VDIRGRIEGE IGAFPYQRPV KNIGLLSSVD 180 QGSFLGGAQV TNSCDFRCND QMYCNPGMQE AMSAQVLGQG ACDIANIQCI GSAKSGSTKL 240 PVCGGVDTVP TGCLPNVEKK *

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Pvr.7970	1e-165	callus\| leaf\| root\| stem

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor involved in the response to zinc ion deficiency. Binds to the consensus sequence 5'-[AG]TGTCGACA[CT]-3' also called zinc deficiency response element (ZDRE). The ZDRE sequence is conserved in the plant kingdom and present in the promoters of genes that constitute the primary response to zinc deficiency, comprising additional ZIP metal transporter genes (PubMed:20479230, PubMed:26306426). Required for zinc accumulation in roots. Mediates the expression of the zinc transporters ZIP3, ZIP4, ZIP5 and ZIP9 during growth in zinc-deficient conditions. ZIP9 transporter is involved in zinc uptake in roots (PubMed:26306426). {ECO:0000269\|PubMed:20479230, ECO:0000269\|PubMed:26306426}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Pavir.4NG326900.1.p

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Induced by zinc deficiency. {ECO:0000269\|PubMed:20479230}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_025812387.1	0.0	basic leucine zipper 23-like
Refseq	XP_025812388.1	0.0	basic leucine zipper 23-like
Swissprot	Q8VY76	1e-76	BZP19_ARATH; Basic leucine zipper 19
TrEMBL	A0A2S3HGA5	0.0	A0A2S3HGA5_9POAL; Uncharacterized protein
TrEMBL	A0A2T7DU25	0.0	A0A2T7DU25_9POAL; Uncharacterized protein
TrEMBL	A0A3L6PBA5	0.0	A0A3L6PBA5_PANMI; Putative transcription factor kapC
STRING	Pavir.Db00007.1.p	0.0	(Panicum virgatum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP4175	35	72

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G35040.1	2e-69	bZIP family protein

Link Out ? help Back to Top
Phytozome	Pavir.4NG326900.1.p

Publications ? help Back to Top
Azevedo H, et al. Transcriptomic profiling of Arabidopsis gene expression in response to varying micronutrient zinc supply. Genom Data, 2016. 7: p. 256-8 [PMID:26981422] Castro PH, et al. Phylogenetic analysis of F-bZIP transcription factors indicates conservation of the zinc deficiency response across land plants. Sci Rep, 2017. 7(1): p. 3806 [PMID:28630437] Henriques AR,Farias DDR,Costa de Oliveira A Identification and characterization of the bZIP transcription factor involved in zinc homeostasis in cereals. Genet. Mol. Res., 2017. [PMID:28671251] Nazri AZ,Griffin JHC,Peaston KA,Alexander-Webber DGA,Williams LE F-group bZIPs in barley-a role in Zn deficiency. Plant Cell Environ., 2017. 40(11): p. 2754-2770 [PMID:28763829] Ezer D, et al. The G-Box Transcriptional Regulatory Code in Arabidopsis. Plant Physiol., 2017. 175(2): p. 628-640 [PMID:28864470]