PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pavir.4NG318400.3.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
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Family | G2-like | ||||||||
Protein Properties | Length: 488aa MW: 53245.5 Da PI: 5.0721 | ||||||||
Description | G2-like family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | G2-like | 74.7 | 1.2e-23 | 104 | 155 | 3 | 55 |
G2-like 3 rlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 r+ Wt eLHe+F++a+e L G ++AtP +i++lm+vkgLt +h+ SHLQk+R+ Pavir.4NG318400.3.p 104 RVTWTVELHEKFLDAIEVL-GDKNATPEKIRRLMNVKGLTWKHIGSHLQKHRS 155 99*****************.9******************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 15.303 | 99 | 158 | IPR017930 | Myb domain |
Gene3D | G3DSA:1.10.10.60 | 3.3E-22 | 100 | 157 | IPR009057 | Homeodomain-like |
SuperFamily | SSF46689 | 1.97E-15 | 103 | 158 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01557 | 3.6E-19 | 104 | 157 | IPR006447 | Myb domain, plants |
Pfam | PF00249 | 1.7E-6 | 104 | 154 | IPR001005 | SANT/Myb domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 488 aa Download sequence Send to blast |
MCAHYDEEAL SEHVSLGACS HVLKPLDTAS LNMLKQKALE HKSKKVTPQG PIPNRTKSRM 60 VSSSTERLQE MLILEGNNLS NPGNSEFEVP EVEKADGCSK KLDRVTWTVE LHEKFLDAIE 120 VLGDKNATPE KIRRLMNVKG LTWKHIGSHL QKHRSRKQNA NQGGQHQRNA SKKLVSELIG 180 SGQTAATTES ITSRVDADIR EAYPSRMWKQ VKEEAALKTY MYTSTSGISR DGTKSVWDEY 240 QKGLQKKFSA SNKRWQQIGQ SSSKCQLPVK NNVVVIDGGV SSEAPKATGE IGYGASIESS 300 GSSSLSTSLA DQVGEKNHTE ASGKNYNMGN INLLEGTMNT DASDLLAFLL SDDLDLLGPF 360 DGWEEQVSDL MSELQGLVEQ RNLGLEDPLQ VDNAWNKDLA LPSLINTDGS MAQEVTFENV 420 PVDNAVVPIA QANGSSQDRQ NLGLEDPLQV DNTWNKGLES PSLINIDGSM AQESTVQNGP 480 VIQSITL* |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Pvr.13864 | 1e-107 | leaf| stem |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Pavir.4NG318400.3.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_014660566.2 | 0.0 | uncharacterized protein LOC101775816 isoform X2 | ||||
TrEMBL | A0A2T7DUC5 | 0.0 | A0A2T7DUC5_9POAL; Uncharacterized protein | ||||
STRING | Pavir.Db00207.1.p | 0.0 | (Panicum virgatum) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G59570.1 | 7e-15 | G2-like family protein |
Link Out ? help Back to Top | |
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Phytozome | Pavir.4NG318400.3.p |