PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.4NG318400.1.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family G2-like
Protein Properties Length: 488aa    MW: 53245.5 Da    PI: 5.0721
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.4NG318400.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like74.71.2e-23104155355
              G2-like   3 rlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 
                          r+ Wt eLHe+F++a+e L G ++AtP +i++lm+vkgLt +h+ SHLQk+R+
  Pavir.4NG318400.1.p 104 RVTWTVELHEKFLDAIEVL-GDKNATPEKIRRLMNVKGLTWKHIGSHLQKHRS 155
                          99*****************.9******************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129415.30399158IPR017930Myb domain
Gene3DG3DSA:1.10.10.603.3E-22100157IPR009057Homeodomain-like
SuperFamilySSF466891.97E-15103158IPR009057Homeodomain-like
TIGRFAMsTIGR015573.6E-19104157IPR006447Myb domain, plants
PfamPF002491.7E-6104154IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 488 aa     Download sequence    Send to blast
MCAHYDEEAL SEHVSLGACS HVLKPLDTAS LNMLKQKALE HKSKKVTPQG PIPNRTKSRM  60
VSSSTERLQE MLILEGNNLS NPGNSEFEVP EVEKADGCSK KLDRVTWTVE LHEKFLDAIE  120
VLGDKNATPE KIRRLMNVKG LTWKHIGSHL QKHRSRKQNA NQGGQHQRNA SKKLVSELIG  180
SGQTAATTES ITSRVDADIR EAYPSRMWKQ VKEEAALKTY MYTSTSGISR DGTKSVWDEY  240
QKGLQKKFSA SNKRWQQIGQ SSSKCQLPVK NNVVVIDGGV SSEAPKATGE IGYGASIESS  300
GSSSLSTSLA DQVGEKNHTE ASGKNYNMGN INLLEGTMNT DASDLLAFLL SDDLDLLGPF  360
DGWEEQVSDL MSELQGLVEQ RNLGLEDPLQ VDNAWNKDLA LPSLINTDGS MAQEVTFENV  420
PVDNAVVPIA QANGSSQDRQ NLGLEDPLQV DNTWNKGLES PSLINIDGSM AQESTVQNGP  480
VIQSITL*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Pvr.138641e-107leaf| stem
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.4NG318400.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_014660566.20.0uncharacterized protein LOC101775816 isoform X2
TrEMBLA0A2T7DUC50.0A0A2T7DUC5_9POAL; Uncharacterized protein
STRINGPavir.Db00207.1.p0.0(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP130171928
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G59570.17e-15G2-like family protein