PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.4NG315800.3.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family G2-like
Protein Properties Length: 349aa    MW: 38127.6 Da    PI: 6.7022
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.4NG315800.3.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like93.12.3e-29267321155
              G2-like   1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 
                          k rlrWt eLHerFveav++L G+ekAtPk++l+lmkv+gLt++hvkSHLQ  Rl
  Pavir.4NG315800.3.p 267 KSRLRWTLELHERFVEAVNKLEGPEKATPKAVLKLMKVEGLTIYHVKSHLQTRRL 321
                          68*************************************************9876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129411.364264324IPR017930Myb domain
Gene3DG3DSA:1.10.10.602.7E-27265322IPR009057Homeodomain-like
SuperFamilySSF466896.27E-15265323IPR009057Homeodomain-like
TIGRFAMsTIGR015579.2E-22267321IPR006447Myb domain, plants
PfamPF002493.9E-8269318IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 349 aa     Download sequence    Send to blast
MSSQSVATGE QIIAPDQIVH ACTSTQTSVH KLFDAKLDHG FLIDDTLSST SQSSNIKTEL  60
IRTSSLSRSL SVNLHKRSPE SDPESPLSHV SHPKFSDPIL SNSSTFCTSL FSSSSKNTDP  120
CRQMGTLPFL PHPPKCEQQV SAGQSSSSSL LLSGDTGNAL EEAGQSDDLK DFLNLSGDAS  180
DGSFHGESNT LSFDEQMEFQ FLSEQLGIAI TDNEESPHLD DIYGTPPQLS SLPEPSCSNQ  240
SKQNLGSPVK VQLSSSRSSS DSATTNKSRL RWTLELHERF VEAVNKLEGP EKATPKAVLK  300
LMKVEGLTIY HVKSHLQTRR LPLRIRKHNW VAAAVIPAKL RIYKWQKL*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6j4k_A3e-22267320255Protein PHOSPHATE STARVATION RESPONSE 1
6j4k_B3e-22267320255Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_A3e-22267320255Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_C3e-22267320255Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_D3e-22267320255Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_F3e-22267320255Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_H3e-22267320255Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_J3e-22267320255Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Pvr.17610.0callus| leaf| root| stem
Expression -- Description ? help Back to Top
Source Description
UniprotDEVELOPMENTAL STAGE: Expressed throughout all stages of plant growth. Increased expression in leaves before the booting stage. {ECO:0000269|PubMed:26082401}.
UniprotTISSUE SPECIFICITY: Expressed in the root cap and in the exodermis of the root, in the root tip of lateral roots, in the mesophyll cells of the leaf, in pollen, vascular cylinder of the anther and the veins of the lemma, palea and pistils, and in the xylem and phloem regions of large vascular bundles, small vascular bundles and diffuse vascular bundles in node I (PubMed:26082401). {ECO:0000269|PubMed:26082401}.
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor involved in phosphate starvation signaling (PubMed:26082401). Binds to P1BS, an imperfect palindromic sequence 5'-GNATATNC-3', to promote the expression of inorganic phosphate (Pi) starvation-responsive genes (PubMed:26082401). Functionally redundant with PHR1 and PHR2 in regulating Pi starvation response and Pi homeostasis (PubMed:26082401). {ECO:0000269|PubMed:26082401}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.4NG315800.3.p
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Up-regulated under Pi starvation conditions. {ECO:0000269|PubMed:26082401}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKF1846681e-172KF184668.1 Saccharum hybrid cultivar R570 clone BAC 005I10 complete sequence.
GenBankKF1847071e-172KF184707.1 Saccharum hybrid cultivar R570 clone BAC 084G07 complete sequence.
GenBankKF1848331e-172KF184833.1 Saccharum hybrid cultivar R570 clone BAC 001I10 complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025812859.10.0protein PHOSPHATE STARVATION RESPONSE 3
RefseqXP_025812860.10.0protein PHOSPHATE STARVATION RESPONSE 3
RefseqXP_025812862.10.0protein PHOSPHATE STARVATION RESPONSE 3
RefseqXP_025812863.10.0protein PHOSPHATE STARVATION RESPONSE 3
SwissprotQ6YXZ41e-116PHR3_ORYSJ; Protein PHOSPHATE STARVATION RESPONSE 3
TrEMBLA0A3L6PFL70.0A0A3L6PFL7_PANMI; Uncharacterized protein
STRINGPavir.Db00228.1.p0.0(Panicum virgatum)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G13040.26e-49G2-like family protein
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]