PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.4NG310300.2.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family GATA
Protein Properties Length: 327aa    MW: 34539.3 Da    PI: 5.4523
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.4NG310300.2.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA551.1e-17239275135
                 GATA   1 CsnCgttk..TplWRrgpdgnktLCnaCGlyyrkkgl 35 
                          C++Cgt+   Tp++Rrgpdg++tLCnaCGl+++ kgl
  Pavir.4NG310300.2.p 239 CHHCGTSAtaTPMMRRGPDGPRTLCNACGLMWANKGL 275
                          ******9999***********************9996 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5132015.243102137IPR010399Tify domain
SMARTSM009796.1E-12102137IPR010399Tify domain
PfamPF062003.4E-13105136IPR010399Tify domain
PfamPF062037.3E-16163205IPR010402CCT domain
PROSITE profilePS5101713.404163205IPR010402CCT domain
SMARTSM004011.9E-11233291IPR000679Zinc finger, GATA-type
PROSITE profilePS501149.618233292IPR000679Zinc finger, GATA-type
SuperFamilySSF577163.71E-12237287No hitNo description
CDDcd002021.12E-14238285No hitNo description
Gene3DG3DSA:3.30.50.101.9E-16238280IPR013088Zinc finger, NHR/GATA-type
PfamPF003201.1E-15239275IPR000679Zinc finger, GATA-type
PROSITE patternPS003440239266IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 327 aa     Download sequence    Send to blast
PPLPRRWTTS PRWPPRRSAE PLHRASAAAA AASRGTNRVG EEEDDDDEEE DEVEDDEDEQ  60
EGQDGGVGGE HVPMDADAAA AAAAAASAQM DPHAAMVPGA VPPMAPNQLT LSFQGEVYVF  120
DSVSPDKVQA VLLLLGGREL NNPGLGNASS SGAYSKRLNY PHRVASLMRF REKRKERNFD  180
KKIRYSVRKE VALRMQRNRG QFTSSKPKPD EISASEIMTA DGSPNWGSVE GRPPSAAECH  240
HCGTSATATP MMRRGPDGPR TLCNACGLMW ANKGLLRDLS KGPGPLQAVQ SAPVLDGGNG  300
SVIGNPGGGG LENPASAMAN GHESSM*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Pvr.214041e-42callus| leaf
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters. {ECO:0000250|UniProtKB:Q8LAU9}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.4NG310300.2.p
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By abscisic acid (ABA), and drought and salt stresses. Down-regulated by jasmonate and wounding. {ECO:0000269|PubMed:19618278}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025812856.11e-164GATA transcription factor 20-like isoform X2
SwissprotQ5Z4U51e-127GAT20_ORYSJ; GATA transcription factor 20
TrEMBLA0A2S3HGQ41e-163A0A2S3HGQ4_9POAL; Uncharacterized protein
TrEMBLA0A2T7DUL01e-163A0A2T7DUL0_9POAL; Uncharacterized protein
STRINGPavir.Db00254.1.p0.0(Panicum virgatum)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G21175.21e-72ZIM-like 1