PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pavir.4NG305300.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
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Family | HD-ZIP | ||||||||
Protein Properties | Length: 231aa MW: 25146.3 Da PI: 9.9028 | ||||||||
Description | HD-ZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 57.5 | 2.3e-18 | 94 | 148 | 2 | 56 |
T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 rk+ ++tkeq + Le+ F+ ++ +s++++ eLA++++L+ rqV vWFqNrRa+ k Pavir.4NG305300.1.p 94 RKKLRLTKEQSTLLEDTFRAHNILSHAQKHELAHQVNLSARQVEVWFQNRRARTK 148 788899***********************************************98 PP | |||||||
2 | HD-ZIP_I/II | 114.1 | 8.6e-37 | 94 | 182 | 1 | 89 |
HD-ZIP_I/II 1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLre 89 +kk+rl+keq++lLE++F++++ L++ +K+ela++++l++rqv+vWFqnrRARtk+kq+E+d+e Lkr++++l+ en+rL++e ++L++ Pavir.4NG305300.1.p 94 RKKLRLTKEQSTLLEDTFRAHNILSHAQKHELAHQVNLSARQVEVWFQNRRARTKLKQTEVDCEILKRCCESLTGENQRLKHELAQLQR 182 69************************************************************************************985 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF46689 | 6.42E-19 | 82 | 151 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 1.2E-18 | 82 | 149 | IPR009057 | Homeodomain-like |
PROSITE profile | PS50071 | 17.119 | 90 | 150 | IPR001356 | Homeobox domain |
SMART | SM00389 | 9.1E-14 | 92 | 154 | IPR001356 | Homeobox domain |
CDD | cd00086 | 1.39E-13 | 94 | 151 | No hit | No description |
Pfam | PF00046 | 8.6E-16 | 94 | 148 | IPR001356 | Homeobox domain |
PROSITE pattern | PS00027 | 0 | 125 | 148 | IPR017970 | Homeobox, conserved site |
SMART | SM00340 | 6.4E-14 | 150 | 192 | IPR003106 | Leucine zipper, homeobox-associated |
Pfam | PF02183 | 1.4E-9 | 150 | 181 | IPR003106 | Leucine zipper, homeobox-associated |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 231 aa Download sequence Send to blast |
MYSASAMEAE DFGKSWLGLG IGGGDLKRSH GERRSAVRLD LLFPQQSVKE EEAAVGSTKA 60 EKGARKRLKI TDDDGVGRRS LEPSPSDDGG AGARKKLRLT KEQSTLLEDT FRAHNILSHA 120 QKHELAHQVN LSARQVEVWF QNRRARTKLK QTEVDCEILK RCCESLTGEN QRLKHELAQL 180 QRSAAAGLYV QLPRRGAPPA KATICPSCDK VTLTTSGGET SKSSSGSYSS * |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 142 | 150 | RRARTKLKQ |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Expressed in roots, leaf sheaths and blades and panicles. {ECO:0000269|PubMed:17999151}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor. {ECO:0000250}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Pavir.4NG305300.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | EU955431 | 8e-46 | EU955431.1 Zea mays clone 1531862 hypothetical protein mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_025813457.1 | 1e-121 | homeobox-leucine zipper protein HOX18-like | ||||
Swissprot | Q5Z6F6 | 1e-57 | HOX18_ORYSJ; Homeobox-leucine zipper protein HOX18 | ||||
TrEMBL | A0A2S3HGQ7 | 1e-120 | A0A2S3HGQ7_9POAL; Uncharacterized protein | ||||
STRING | Pavir.J23758.1.p | 1e-168 | (Panicum virgatum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP8130 | 34 | 48 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G16780.1 | 2e-45 | homeobox protein 2 |
Link Out ? help Back to Top | |
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Phytozome | Pavir.4NG305300.1.p |