PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.4NG304800.1.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family NAC
Protein Properties Length: 411aa    MW: 45129.8 Da    PI: 9.5076
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.4NG304800.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM161.24e-50131491128
                  NAM   1 lppGfrFhPtdeelvveyLkkkvegkk........lelee....vikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknrat 78 
                          lppGfrFhP+d+elv +yL+kk+ g+         ++       ++ +vd++k+ePwdLp  +  + kewyf+s rd+kyatg+r+nrat
  Pavir.4NG304800.1.p  13 LPPGFRFHPRDDELVLDYLAKKLGGDGgggggsvvVS--IygcpTMVDVDLNKCEPWDLPDIACIGGKEWYFYSLRDRKYATGQRTNRAT 100
                          79**********************9998888876622..13443699*************6555689*********************** PP

                  NAM  79 ksgyWkatgkdkevlskkgelvglkktLvfykgrapkgektdWvmheyrl 128
                          +sgyWkatgkd+++ + kg lvg++ktLvfy+grapkg+kt+Wvmhe+r+
  Pavir.4NG304800.1.p 101 DSGYWKATGKDRPISR-KGLLVGMRKTLVFYQGRAPKGKKTEWVMHEFRM 149
                          **************99.999****************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019413.79E-593172IPR003441NAC domain
PROSITE profilePS5100554.48913172IPR003441NAC domain
PfamPF023659.1E-2514149IPR003441NAC domain
SuperFamilySSF813836.41E-8279320IPR001810F-box domain
Gene3DG3DSA:1.20.1280.501.5E-4282312No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 411 aa     Download sequence    Send to blast
MAMNSLSMVE ARLPPGFRFH PRDDELVLDY LAKKLGGDGG GGGGSVVVSI YGCPTMVDVD  60
LNKCEPWDLP DIACIGGKEW YFYSLRDRKY ATGQRTNRAT DSGYWKATGK DRPISRKGLL  120
VGMRKTLVFY QGRAPKGKKT EWVMHEFRME GQGDPMKLPF KEDWVLCRVF YKSRATVAKP  180
PTESSSYNID AATTSLPPLI DNYNISFDQS GSVQNLEGYE QVPCFSNNPS QPSSSMNAPL  240
PSSAMADHQE QHMGKSIKDV LMSQFSRGGQ FGLRAQFGLP GDNLADEVLR RLRAHSLARC  300
RCVCVLWHAL VDGRGLLLPH ALPPRAFPGF FATARVKPWR SVHPCFLPHA GLAGSSARQA  360
RLPARAPPAR HQCNGLVLCF QDAPGAAGFL PHQARGPEPS LASTRLRPCL *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3ulx_A8e-47917311169Stress-induced transcription factor NAC1
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Pvr.55050.0callus| leaf| root
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Predominantly expressed in the root tip and in lateral root initiation sites. Also detected in expanding cotyledon, and in leaf primordia. {ECO:0000269|PubMed:11114891}.
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that mediates auxin signaling to promote lateral root development. Activates the expression of two downstream auxin-responsive genes, DBP and AIR3. {ECO:0000269|PubMed:11114891}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.4NG304800.1.p
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by auxin.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0655120.0BT065512.1 Zea mays full-length cDNA clone ZM_BFb0202I06 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_022681432.10.0NAC domain-containing protein 21/22
SwissprotQ84TE69e-83NAC22_ARATH; NAC domain-containing protein 21/22
TrEMBLK3XYG71e-179K3XYG7_SETIT; Uncharacterized protein
STRINGPavir.Db00380.1.p0.0(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP101237138
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G56010.22e-83NAC domain containing protein 1
Publications ? help Back to Top
  1. Le Hénanff G, et al.
    Grapevine NAC1 transcription factor as a convergent node in developmental processes, abiotic stresses, and necrotrophic/biotrophic pathogen tolerance.
    J. Exp. Bot., 2013. 64(16): p. 4877-93
    [PMID:24043850]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Xiao D, et al.
    SENESCENCE-SUPPRESSED PROTEIN PHOSPHATASE Directly Interacts with the Cytoplasmic Domain of SENESCENCE-ASSOCIATED RECEPTOR-LIKE KINASE and Negatively Regulates Leaf Senescence in Arabidopsis.
    Plant Physiol., 2015. 169(2): p. 1275-91
    [PMID:26304848]
  4. Huo X,Wang C,Teng Y,Liu X
    Identification of miRNAs associated with dark-induced senescence in Arabidopsis.
    BMC Plant Biol., 2015. 15: p. 266
    [PMID:26530097]
  5. Chen X, et al.
    Auxin-Independent NAC Pathway Acts in Response to Explant-Specific Wounding and Promotes Root Tip Emergence during de Novo Root Organogenesis in Arabidopsis.
    Plant Physiol., 2016. 170(4): p. 2136-45
    [PMID:26850273]
  6. Liu C,Wang B,Li Z,Peng Z,Zhang J
    TsNAC1 Is a Key Transcription Factor in Abiotic Stress Resistance and Growth.
    Plant Physiol., 2018. 176(1): p. 742-756
    [PMID:29122985]