PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pavir.4NG303000.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
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Family | ARF | ||||||||
Protein Properties | Length: 845aa MW: 93759.3 Da PI: 6.1746 | ||||||||
Description | ARF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 77 | 2e-24 | 67 | 168 | 1 | 99 |
EEEE-..-HHHHTT-EE--HHH.HTT......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkl 84 f+k+lt sd++++g +++p++ ae+ ++++++ +l+ +d++g++W++++i+r++++r++lt+GW+ Fv+a++L +gD+v+F Pavir.4NG303000.1.p 67 FCKTLTASDTSTHGGFSVPRRAAEKVfppldfTQQPPCQ-ELIAKDLHGNEWKFRHIFRGQPKRHLLTTGWSVFVSAKRLVAGDSVLFI- 154 99*****************************96666675.9************************************************. PP -SSSEE..EEEEE-S CS B3 85 dgrsefelvvkvfrk 99 ++++ +l+++++r+ Pavir.4NG303000.1.p 155 -WNDNNQLLLGIRRA 168 .7777778***9997 PP | |||||||
2 | Auxin_resp | 120.3 | 1.5e-39 | 193 | 276 | 1 | 83 |
Auxin_resp 1 aahaastksvFevvYnPrastseFvvkvekvekalk.vkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsLk 83 aahaast+s F+++YnPras+seFv++++k++ka++ +++svGmRf+m fete+ss rr++Gt++g+sdld+vrWpnS+Wrs+k Pavir.4NG303000.1.p 193 AAHAASTNSRFTIFYNPRASPSEFVIPLAKYVKAVYhTRISVGMRFRMLFETEESSVRRYMGTITGISDLDSVRWPNSHWRSVK 276 79*********************************9789******************************************985 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101936 | 2.49E-48 | 52 | 196 | IPR015300 | DNA-binding pseudobarrel domain |
Gene3D | G3DSA:2.40.330.10 | 3.8E-43 | 58 | 182 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 6.36E-23 | 66 | 167 | No hit | No description |
SMART | SM01019 | 2.2E-25 | 67 | 169 | IPR003340 | B3 DNA binding domain |
PROSITE profile | PS50863 | 13.014 | 67 | 169 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 5.4E-23 | 67 | 168 | IPR003340 | B3 DNA binding domain |
Pfam | PF06507 | 1.2E-34 | 193 | 276 | IPR010525 | Auxin response factor |
SuperFamily | SSF54277 | 1.24E-7 | 703 | 788 | No hit | No description |
Pfam | PF02309 | 1.3E-8 | 709 | 798 | IPR033389 | AUX/IAA domain |
PROSITE profile | PS51745 | 22.918 | 712 | 796 | IPR000270 | PB1 domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0009725 | Biological Process | response to hormone | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0005515 | Molecular Function | protein binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 845 aa Download sequence Send to blast |
MESQIPNYPN LPPQLICQLH NVTMHADAET DEVYAQMTLQ PLNPQELKDP YLPAELSSAN 60 NQPTNYFCKT LTASDTSTHG GFSVPRRAAE KVFPPLDFTQ QPPCQELIAK DLHGNEWKFR 120 HIFRGQPKRH LLTTGWSVFV SAKRLVAGDS VLFIWNDNNQ LLLGIRRANR PQTVMPSSVL 180 SSDSMHIGLL AAAAHAASTN SRFTIFYNPR ASPSEFVIPL AKYVKAVYHT RISVGMRFRM 240 LFETEESSVR RYMGTITGIS DLDSVRWPNS HWRSVKVGWD ESTAGERQPR VSLWEIEPLT 300 TFPMYPSPFP LRLKRPWPTG LPSLHGGKDD DLTNSLMWLR DTANPGFQSL NFGGLGVNPW 360 MQPRLDASFL GLQPDMYQAM ATAAFQDPTK QVSSTILQFQ QPQNIAGRAA PLLSSQILQQ 420 VQPQFQQQPY LQNIPESTIH GQGQPELLKQ QIQRNQSFNE QKPQLQTQQQ QQESQQQSQC 480 LQVPQHQQMQ QQNNMTNYQS VSNALSAFSQ LSSAPQSSPV ALQPILPFSQ AQSFAETTIS 540 SLSPSNATAM QNTLRPFSSE AASHLSMPRP TAVPVADPWS SKRVAVESLL PSRTQVTSQM 600 EQLDSTPPSI PQSSALAPLP GRGCLDQDVN SDPQNHLLFG VSIDSQSLLM QGGIPGLQNG 660 NDSTAIPYST NFLSPSQNDF PLDHTLNSSG CLDDAGYVPC SDNSDQVNRP PATFVKVYKS 720 GTYGRSLDIT RFSSYHELRR ELGRLFGLEG QLEDPMRSGW QLVFVDREED VLLVGDDPWQ 780 EFVSTVSCIK ILSPQEVQQM GKQGLELLSS APARRLGSSC DDYVSRQESR SLSTGIASVG 840 SVEF* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
4ldu_A | 1e-136 | 3 | 297 | 94 | 388 | Auxin response factor 5 |
Search in ModeBase |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Pvr.902 | 0.0 | leaf| root| stem |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Expressed in roots, culms, leaves and young panicles. {ECO:0000269|PubMed:17408882}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Auxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs). |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Pavir.4NG303000.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | BT088318 | 0.0 | BT088318.1 Zea mays full-length cDNA clone ZM_BFc0133F15 mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_025811094.1 | 0.0 | auxin response factor 17 | ||||
Refseq | XP_025811095.1 | 0.0 | auxin response factor 17 | ||||
Swissprot | Q653U3 | 0.0 | ARFQ_ORYSJ; Auxin response factor 17 | ||||
TrEMBL | A0A3L6RWL6 | 0.0 | A0A3L6RWL6_PANMI; Auxin response factor | ||||
STRING | Pavir.Db00366.1.p | 0.0 | (Panicum virgatum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP2012 | 36 | 85 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G30330.1 | 0.0 | auxin response factor 6 |
Link Out ? help Back to Top | |
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Phytozome | Pavir.4NG303000.1.p |
Publications ? help Back to Top | |||
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