PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.4NG301600.1.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family bHLH
Protein Properties Length: 346aa    MW: 36692.6 Da    PI: 8.417
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.4NG301600.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH43.74.9e-14133183255
                          HHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                  HLH   2 rrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                          r++h ++Er+RR+++N+ +++Lr l+P++   ++++ + a+i+  A++++k+L+
  Pavir.4NG301600.1.p 133 RQNHIAVERNRRRQMNEHLATLRALMPPS---YARRGDQASIVGGAIDFVKELE 183
                          99***************************...9******************995 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474591.26E-16130200IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088815.44131182IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000832.38E-13133187No hitNo description
PfamPF000101.6E-11133183IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.106.4E-14133194IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003532.7E-10137188IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 346 aa     Download sequence    Send to blast
MALLEAVVFP PEPDHPRVPC CRSCGTSCVL SGYGVAASAG EFEGIIERGV VVQEDGELPV  60
VTPPHGSACC AWAGGAATSS CWVGPVSSTT TTLATSSARR PVYQPAGTRT PRRRRGTIAK  120
AARRSLVEAE SHRQNHIAVE RNRRRQMNEH LATLRALMPP SYARRGDQAS IVGGAIDFVK  180
ELEHHLQSLQ AQRRHHPAAV GHGAERFPGF FTFPQYPAAA AAAAANDDVD NASSGGGEGR  240
PVTRPGVAAD VEATVSEGHA TVKVLAPRRR RMLLRLLLGM QRRGLAALHL NASTTADQMV  300
LYTFSLKMGD GWQLSSAGDV AAAVHDIVVT AMDTAEECPI IYPTN*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1132143RQNHIAVERNRR
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed constitutively in roots, leaves, stems, and flowers. {ECO:0000269|PubMed:12679534}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.4NG301600.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025813203.11e-151transcription factor bHLH96-like
SwissprotQ9C7T41e-51BH096_ARATH; Transcription factor bHLH96
TrEMBLA0A2T7E0J41e-160A0A2T7E0J4_9POAL; Uncharacterized protein
STRINGPavir.Db01842.1.p0.0(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP104622843
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G72210.17e-44bHLH family protein
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]
  2. Ezer D, et al.
    The G-Box Transcriptional Regulatory Code in Arabidopsis.
    Plant Physiol., 2017. 175(2): p. 628-640
    [PMID:28864470]