PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.4NG300500.1.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family MYB
Protein Properties Length: 434aa    MW: 47908.9 Da    PI: 12.4487
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.4NG300500.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding53.36.3e-171562148
                         TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
      Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                         +g+WT+ Ed+llvd v+++G g+W+++ r+ g+ R++k+c++rw ++l
  Pavir.4NG300500.1.p 15 KGPWTQAEDKLLVDHVRRHGEGNWNAVRRETGLQRCGKSCRLRWANHL 62
                         79******************************************9986 PP
2Myb_DNA-binding47.83.4e-1568111146
                          TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
      Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                          +g++++eE+ ++++++ + G++ W++I+++++ gRt++++k++w++
  Pavir.4NG300500.1.p  68 KGPFSPEEERQILRLHGLIGNK-WARISSHLP-GRTDNEIKNYWNT 111
                          79********************.*********.***********97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129415.0751062IPR017930Myb domain
SuperFamilySSF466891.72E-3012109IPR009057Homeodomain-like
SMARTSM007171.6E-131464IPR001005SANT/Myb domain
PfamPF002497.1E-151562IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.605.8E-221669IPR009057Homeodomain-like
CDDcd001679.13E-121762No hitNo description
PROSITE patternPS0017503039IPR001345Phosphoglycerate/bisphosphoglycerate mutase, active site
PROSITE profilePS5129425.663117IPR017930Myb domain
SMARTSM007177.2E-1667115IPR001005SANT/Myb domain
PfamPF002491.7E-1468111IPR001005SANT/Myb domain
CDDcd001671.83E-1170113No hitNo description
Gene3DG3DSA:1.10.10.601.0E-2470116IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008152Biological Processmetabolic process
GO:0003677Molecular FunctionDNA binding
GO:0003824Molecular Functioncatalytic activity
Sequence ? help Back to Top
Protein Sequence    Length: 434 aa     Download sequence    Send to blast
MARSGGVEGG GGLKKGPWTQ AEDKLLVDHV RRHGEGNWNA VRRETGLQRC GKSCRLRWAN  60
HLRPNLRKGP FSPEEERQIL RLHGLIGNKW ARISSHLPGR TDNEIKNYWN TRLKRRQRAG  120
LPLYPPDIER EIALLRAQNA NPFADCRRQC QRQRQPPAAA PLRREQPVRA AADRAVAVAL  180
GLALAADQPE LPAPEPDAGD AAGVPPPRQP AVAAAGVPPA PPGRRRRRAR PRRRLRLLGP  240
AAAAHQATAG GAPFEPIRHL EQRQRRRAAG VAAARRRPPA AAQPDHGQGQ LHARALVPRA  300
RLLQQAARPR RRERQRRHLA LPPRRGHAPR RDMELHLRLG RSASAMIIVS HHMLLHLGNR  360
CVSEDVKPMK RRTPSEAGIS DMFGAAARGW PPGSGSAPAA GRRRRRRGRR RPSPTTSSAW  420
RCSSSMSVAT TVN*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A1e-26131165107B-MYB
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1225235RRRARPRRRLR
2229235RPRRRLR
3401408RRRRRRGR
4401409RRRRRRGRR
5402409RRRRRGRR
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.4NG300500.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0387231e-170BT038723.1 Zea mays full-length cDNA clone ZM_BFb0313M23 mRNA, complete cds.
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP123972632
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G06100.13e-58myb domain protein 33