PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pavir.4NG268500.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
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Family | CO-like | ||||||||
Protein Properties | Length: 363aa MW: 38426.2 Da PI: 6.4397 | ||||||||
Description | CO-like family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-B_box | 21.2 | 6.1e-07 | 54 | 99 | 3 | 42 |
zf-B_box 3 erkCpeHeekelqlfCedCqqllCedClleeHkg......Htvvpl 42 ++C+ +e ++ C+ + lC+ C +H H +vp+ Pavir.4NG268500.1.p 54 VWMCEVCELAPAAVTCKADAAVLCAACDADIHDAnplarrHARVPV 99 689*****************************44677777888775 PP | |||||||
2 | CCT | 70.4 | 4.6e-24 | 288 | 331 | 1 | 44 |
CCT 1 ReaallRYkeKrktRkFeKkirYesRKavAesRpRvKGrFvkqa 44 Rea+l+RY+eKrk+R+FeK+irY+sRKa+Ae+RpR+KGrF+k+a Pavir.4NG268500.1.p 288 REARLMRYREKRKNRRFEKTIRYASRKAYAETRPRIKGRFAKRA 331 9*****************************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00336 | 0.32 | 9 | 51 | IPR000315 | B-box-type zinc finger |
PROSITE profile | PS50119 | 10.352 | 52 | 99 | IPR000315 | B-box-type zinc finger |
SMART | SM00336 | 4.1E-13 | 52 | 99 | IPR000315 | B-box-type zinc finger |
CDD | cd00021 | 1.90E-7 | 55 | 99 | No hit | No description |
PROSITE profile | PS51017 | 16.896 | 288 | 330 | IPR010402 | CCT domain |
Pfam | PF06203 | 8.2E-18 | 288 | 330 | IPR010402 | CCT domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0005622 | Cellular Component | intracellular | ||||
GO:0005515 | Molecular Function | protein binding | ||||
GO:0008270 | Molecular Function | zinc ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 363 aa Download sequence Send to blast |
MELHKYWGVG GRRCGGCEAA PAAVHCRSCP AGGAFLCTAC DARPGHARLG HERVWMCEVC 60 ELAPAAVTCK ADAAVLCAAC DADIHDANPL ARRHARVPVA PIGSEAAAAA VEAMLFGTGE 120 PAASEAEEPQ NAAAGHNHQH ALNLNVEAKD MKLDYLFSDL DPYLSVDIPR FQHADSVVPS 180 GVGAGAAGTV ELDFTCGIGV KPSSYSSYTA TSLAHSGSSS EVGVVPEAFC GGGGSFELDF 240 TRPKPQAYMP YTATPQSHSV SSVDVEVVPE RGDMMAAARP VPLVGESREA RLMRYREKRK 300 NRRFEKTIRY ASRKAYAETR PRIKGRFAKR ADHDADDAEA EAAVPSPASY VLDFGYGVVP 360 SF* |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Pvr.609 | 0.0 | leaf |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Pavir.4NG268500.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | EU958126 | 0.0 | EU958126.1 Zea mays clone 1674443 CONSTANS-like protein CO6 mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_025812707.1 | 0.0 | zinc finger protein CONSTANS-LIKE 5-like | ||||
TrEMBL | A0A3L6PCM1 | 0.0 | A0A3L6PCM1_PANMI; Zinc finger protein CONSTANS-LIKE 5-like | ||||
STRING | Pavir.Db00540.1.p | 0.0 | (Panicum virgatum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP3844 | 23 | 48 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G57660.1 | 2e-41 | CONSTANS-like 5 |
Link Out ? help Back to Top | |
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Phytozome | Pavir.4NG268500.1.p |