PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.4NG256600.1.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family G2-like
Protein Properties Length: 560aa    MW: 60542.9 Da    PI: 6.463
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.4NG256600.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like81.68.6e-2654107155
              G2-like   1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 
                          ++r+ W+ +LH +Fvea++++ G+++A+Pk+ile+m+v+gL++e+v+SHLQkYR+
  Pavir.4NG256600.1.p  54 RQRITWSGQLHCKFVEAINKI-GIDRAVPKKILEVMNVDGLSRENVASHLQKYRI 107
                          58*******************.********************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466896.81E-1851111IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.608.4E-2652112IPR009057Homeodomain-like
TIGRFAMsTIGR015579.4E-2355107IPR006447Myb domain, plants
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 560 aa     Download sequence    Send to blast
MEQVRNIWTH VVKKNRSDPR NNISDGNTSN HYKKNKKDEG CAEEDIIETS TQKRQRITWS  60
GQLHCKFVEA INKIGIDRAV PKKILEVMNV DGLSRENVAS HLQKYRIYLR KLSEGTLSHS  120
NPFVDEPQAW ISDQTHAHMS APESFEHHPE LVQPSPFSVG PFNSSNARMS YPSTSGTHNL  180
QQDLIQVGNG VNLPKDVVPV PLPVPVQDVG RFIYSGRPYA TSSSDSLSSS SEFFTSGPSS  240
SSSTNISNGV VFSTSRPFPS GTFGSSFASI SNEYSPSATS IILRGKISEA NRGIPFDAGF  300
FEEIANGDMP ASSSHLPLQH AELANQPSFR IQSSSAGQFN QVAPSSHLPL YSPELANQPL  360
IQIQTSSVDL SNQVDRESHQ FSELYNPINS SRVSVPTRFP DIGHSARMPI SSSHGNHVRI  420
NQLATSVASS GYVPTFESQY QNQMSGLLGR TTQTLGFSEQ VTPFNIGSSA MPIGSSGLGS  480
SSSVGPTLAN LRIGNSITPT QMPSGGAAIG NLPGGGTVDQ QSFCDQVNNS NVLPKRTSEV  540
QDGEIDDVSV FFADWVNQQ*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1irz_A2e-2150113164ARR10-B
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.4NG256600.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A3L6PDP70.0A0A3L6PDP7_PANMI; Uncharacterized protein
STRINGPavir.Db00644.1.p0.0(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP2281434
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G16110.11e-28response regulator 2