PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.4NG252100.1.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family TALE
Protein Properties Length: 319aa    MW: 34608.8 Da    PI: 6.0072
Description TALE family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.4NG252100.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox23.21.2e-072552882154
                          HSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS
             Homeobox  21 knrypsaeereeLAkklgLterqVkvWFqNrRak 54 
                          k +yp++e++++L +++gL+ +q+ +WF N+R +
  Pavir.4NG252100.1.p 255 KWPYPTEEDKARLVQETGLQLKQINNWFINQRKR 288
                          569*****************************87 PP
2ELK30.77.1e-11209230122
                  ELK   1 ELKhqLlrKYsgyLgsLkqEFs 22 
                          ELKh+L+++Y+++L+++++E++
  Pavir.4NG252100.1.p 209 ELKHELKQGYREKLVDIREEIM 230
                          9********************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM012551.6E-194387IPR005540KNOX1
PfamPF037901.5E-164683IPR005540KNOX1
SMARTSM012562.0E-2398153IPR005541KNOX2
PfamPF037911.2E-15106152IPR005541KNOX2
SMARTSM011883.8E-4209230IPR005539ELK domain
PfamPF037891.0E-6209230IPR005539ELK domain
PROSITE profilePS5121310.196209229IPR005539ELK domain
PROSITE profilePS5007111.758229292IPR001356Homeobox domain
SMARTSM003893.3E-10231296IPR001356Homeobox domain
SuperFamilySSF466897.7E-16231295IPR009057Homeodomain-like
CDDcd000864.45E-11232293No hitNo description
Gene3DG3DSA:1.10.10.602.4E-24236293IPR009057Homeodomain-like
PfamPF059203.4E-18249288IPR008422Homeobox KN domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 319 aa     Download sequence    Send to blast
MAFHYPDHAL AMDPAAAAGV GVGAAVNPSF VSPGGGGVGG GWEREKAAIA AHPLYERLLE  60
AHVACLRVAT PVDQLPRIDA QIAARPPPMA AAAAAAAAGG AQSGGEELDL FMTHFVLLLC  120
SFKEQLQQHV RVHAMEAVMA CWELEQTLQS LTGASPGEGT GATMSDDEDN QVDSESNMFD  180
GNEGSDGMGF GPLMLTEGER SLVERVRQEL KHELKQGYRE KLVDIREEIM RKRRAGKLPG  240
DTASTLKAWW QAHSKWPYPT EEDKARLVQE TGLQLKQINN WFINQRKRNW HSNPASSSSD  300
KSKRKRNTAG DGNAEQSW*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1285305RKRNWHSNPASSSSDKSKRKR
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Pvr.22480.0callus| leaf| stem
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Isoform 1 is expressed in roots, leaf blades, leaf sheaths and flowers. Isoform 2 is expressed in leaf blades, leaf sheaths and flowers. {ECO:0000269|PubMed:12034492}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.4NG252100.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankFP0998780.0FP099878.1 Phyllostachys edulis cDNA clone: bphylf032a14, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004965737.10.0homeobox protein knotted-1-like 11 isoform X1
SwissprotQ0E3C30.0KNOS2_ORYSJ; Homeobox protein knotted-1-like 2
TrEMBLK3XYC40.0K3XYC4_SETIT; Uncharacterized protein
STRINGPavir.Db00648.1.p0.0(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP56438169
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G25220.11e-143KNOTTED1-like homeobox gene 3