PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pavir.4NG231900.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
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Family | TCP | ||||||||
Protein Properties | Length: 326aa MW: 34150.6 Da PI: 6.8019 | ||||||||
Description | TCP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | TCP | 124.3 | 1.3e-38 | 87 | 166 | 2 | 83 |
TCP 2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssaseceaesssssas 83 a+k+++++++hTkv+gR+RR+R++a+caar+F+L++eLG+++d++t++WLlqqa+pai ++tgt++++as+ +++ s Pavir.4NG231900.1.p 87 APKRSSNKDRHTKVDGRGRRIRMPALCAARIFQLTRELGHKSDGETVQWLLQQAEPAIVAATGTGTIPASALASVAP--SLP 166 789******************************************************************77732222..222 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF03634 | 2.0E-31 | 92 | 271 | IPR005333 | Transcription factor, TCP |
PROSITE profile | PS51369 | 28.039 | 93 | 147 | IPR017887 | Transcription factor TCP subgroup |
Sequence ? help Back to Top |
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Protein Sequence Length: 326 aa Download sequence Send to blast |
MDPKFPTPPP LNKAEPTTAT TTTTTSTAQQ LDPKDYQHQQ PAQHQEQHHH HLQIQIHQPP 60 QQDGGGGGKE QQLQVAAPAG ERRVALAPKR SSNKDRHTKV DGRGRRIRMP ALCAARIFQL 120 TRELGHKSDG ETVQWLLQQA EPAIVAATGT GTIPASALAS VAPSLPSPNS GFARPHHHHP 180 HHMWAPPTAS AGFSSPAFLN SAGAGAGDAA GIGGLMQRMG LPAGLEMSAG GAAGGTLGAG 240 GHIGFAPMFS GHAMPGLELG LSQDGHIGVL AAHAQSISQF YHQVGAAGAS GQLQHQHEHQ 300 HHHHQQQEDG EDDREDGESD EESGQ* |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Pvr.991 | 0.0 | leaf |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor that binds to the site II motif (3'-TGGGCC/T-5') in the promoter of PCNA-2 and to 3'-GCCCG/A-5' elements in the promoters of cyclin CYCB1-1 and ribosomal protein genes. {ECO:0000269|PubMed:12631321, ECO:0000269|PubMed:16123132}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Pavir.4NG231900.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | BT038672 | 0.0 | BT038672.1 Zea mays full-length cDNA clone ZM_BFb0307K22 mRNA, complete cds. | |||
GenBank | BT068348 | 0.0 | BT068348.1 Zea mays full-length cDNA clone ZM_BFb0130H19 mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_025816563.1 | 1e-150 | transcription factor TCP20-like | ||||
Swissprot | Q9LSD5 | 8e-48 | TCP20_ARATH; Transcription factor TCP20 | ||||
TrEMBL | A0A2S3HNJ1 | 1e-148 | A0A2S3HNJ1_9POAL; Uncharacterized protein | ||||
TrEMBL | A0A2T7DC90 | 1e-148 | A0A2T7DC90_9POAL; Uncharacterized protein | ||||
STRING | Pavir.J03131.1.p | 0.0 | (Panicum virgatum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP2864 | 32 | 69 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G27010.1 | 4e-39 | TCP family protein |
Link Out ? help Back to Top | |
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Phytozome | Pavir.4NG231900.1.p |