PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.4NG215000.2.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family bHLH
Protein Properties Length: 531aa    MW: 56616.3 Da    PI: 6.7919
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.4NG215000.2.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH38.22.6e-12336380554
                          HHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
                  HLH   5 hnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                          h + ErrRR+r+N++f++Lr llP+       K +Ka++L  ++eY+++L
  Pavir.4NG215000.2.p 336 HMISERRRRERLNESFQTLRALLPPG-----SKKDKATVLANTTEYMHKL 380
                          8899********************95.....599************9887 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088815.605331380IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474598.77E-16333401IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.109.9E-16335398IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000104.3E-10336380IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003533.1E-12337386IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.59E-5346380No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 531 aa     Download sequence    Send to blast
MGTLEIPRHR AATRIPGCLY ICLWAPVIDG QLIPSSHLRC VDAWIGGGRA REVFDAYRRA  60
FCAAVSGCVP GWAYRDGRAY MELREPDLMA AASLQVQEQL YHEAGTKTAV FMGCERGEIE  120
VGLSDTAAAA AVAGHVQQSL MEELMQLAPA GPSSSSSSMP SLSIGSPEYS SLIRSMAAVA  180
EPSSQERQPP LHPAAVQLPG LLPPVYGPPQ FLGSEAEDAA IAEAMLAVIS SSAPLPPAAS  240
SDAPPWLVLH RAQRWSPRRR AGAFRAYNAA LSPRARPRPG APGQRMAKTA IALMLSVHVA  300
MRDRELAAAR QQEDAAAAQP PPAPPPPQHT SSQLHHMISE RRRRERLNES FQTLRALLPP  360
GSKKDKATVL ANTTEYMHKL IADVSDLEKR NRQLEAQLGL PLETQQAWSG DDSSERVQVD  420
VTAGASTSAA GGQAQVVSIR VTVRAECDLS EVVIAMLAGI KETGRFAVVT VDARQRSNGH  480
AQVGITLRVE PGGGDDEPDE TTLKEAVAKA VEDAVARPPS PSPPPPQWSP *
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1339344ERRRRE
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.4NG215000.2.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025812545.10.0putative transcription factor bHLH041 isoform X1
TrEMBLA0A3L6PIY50.0A0A3L6PIY5_PANMI; Uncharacterized protein
STRINGPavir.J30600.1.p0.0(Panicum virgatum)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G56960.13e-18bHLH family protein