PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.4NG204700.1.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family M-type_MADS
Protein Properties Length: 137aa    MW: 15604 Da    PI: 5.7098
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.4NG204700.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF343.9e-1134651546
                         HHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEE CS
               SRF-TF 15 kRrngilKKAeELSvLCdaevaviifsstgkl 46
                          R++ +l KA+ELS LC+a +av+ifs++++l
  Pavir.4NG204700.1.p 34 ERKAELLEKASELSQLCGAHAAVVIFSKKQEL 65
                         7****************************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004323.3E-41271IPR002100Transcription factor, MADS-box
PROSITE profilePS5006613.1611265IPR002100Transcription factor, MADS-box
SuperFamilySSF554554.84E-111465IPR002100Transcription factor, MADS-box
CDDcd001208.15E-111460No hitNo description
PfamPF003197.6E-102265IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 137 aa     Download sequence    Send to blast
MVMPEPEGNK TTKKQVIEIR FIEDEEIRFM EDEERKAELL EKASELSQLC GAHAAVVIFS  60
KKQELPQQGG NVRYLVVLYY GLSQYGLNSS WPMKEMTIST SSRSNGSQEE IFRHIYHLLP  120
QPLVTLSLLK TPVVYL*
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.4NG204700.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025813513.18e-22agamous-like MADS-box protein AGL62
TrEMBLA0A2S3HJB71e-19A0A2S3HJB7_9POAL; Uncharacterized protein
TrEMBLA0A3L6PI561e-20A0A3L6PI56_PANMI; Uncharacterized protein
STRINGPavir.Db01107.1.p4e-94(Panicum virgatum)