PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.4NG191600.1.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family FAR1
Protein Properties Length: 672aa    MW: 76360 Da    PI: 7.7839
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.4NG191600.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR173.93.4e-2383173289
                 FAR1   2 fYneYAkevGFsvrkskskkskrng..eitkrtfvCskegkreeekkk.tekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHe 88 
                          fYn+YA + GF +r+++s++++r+g    ++++fvC keg+++++  + ++k++r+r + r gC a+++v ++  +kw+vtkl+leHnH 
  Pavir.4NG191600.1.p  83 FYNAYAVRFGFGIRVARSRSERRKGveVLVMKRFVCLKEGHHKKKPVEpSNKKKRKRLSIRDGCPAMMEVVRRGPDKWVVTKLVLEHNHV 172
                          9**************9999886665216789**********99998887899999**********************************7 PP

                 FAR1  89 l 89 
                          +
  Pavir.4NG191600.1.p 173 I 173
                          6 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031013.5E-2183173IPR004330FAR1 DNA binding domain
PfamPF105513.0E-25261352IPR018289MULE transposase domain
PfamPF044342.1E-7539572IPR007527Zinc finger, SWIM-type
PROSITE profilePS509669.384544576IPR007527Zinc finger, SWIM-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 672 aa     Download sequence    Send to blast
MEYSSSEDEE LVEDFIDVED DTGTENIDQG TAVVASQIHA IHPSDGTMPP TGNELLMAAD  60
VVGRNDEPRM GMEFESDAAA RAFYNAYAVR FGFGIRVARS RSERRKGVEV LVMKRFVCLK  120
EGHHKKKPVE PSNKKKRKRL SIRDGCPAMM EVVRRGPDKW VVTKLVLEHN HVIASADRAR  180
EVQLRRLSGK FQEHENQLQE MRRNVFGDTD AQGLFDYFKR MQSENSGFFC SIQVDSKNCV  240
SNAVWVDARA RMAYTYFGDA VYFDTTYNQN ENMLPFAAFT GVNHHGDTVV FGCALILDRT  300
ESSYGWIFET WLAAMDKRLP FSFTTDEGKG MAAAVAKVFP QCFHRLCRWQ ILSRCKKKLT  360
DVYTRFPGFH DELKRCINEC DTVPVFDMVW GSILDKYVLR DDTWLQSLYE IRHKWVPAYL  420
TSSFSAELSL THRVETVSRF HRNNFSARVS LSTFITRFDQ YVDGLYASEA RKDVVSFPPE  480
QLLKTNMVLE KQAASIYTRA AFETFQVELI EALQHYAVKV QDGPYMKYDV ERDGDPPTRH  540
TVFYNVSEKK AWCDCCRFAF SAILCRHVLG VFVLAGVIML PEPCITKRWT KKAKTGPELI  600
GLNVGNESGS ADSVVSRYND LVRDAMKCAE KGAVSDGTFK VAKEVLSKAF MEIKGLREKL  660
NKDALQSAAS R*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1124138KKKPVEPSNKKKRKR
2125137KKPVEPSNKKKRK
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Pvr.274690.0callus| leaf
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.4NG191600.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025810978.10.0protein FAR1-RELATED SEQUENCE 5-like
RefseqXP_025810979.10.0protein FAR1-RELATED SEQUENCE 5-like
TrEMBLA0A2T7DWY30.0A0A2T7DWY3_9POAL; Uncharacterized protein
STRINGPavir.J21189.1.p0.0(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP1832967
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G38180.11e-123FAR1-related sequence 5