PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.4NG185600.1.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family MYB
Protein Properties Length: 505aa    MW: 55819 Da    PI: 4.4721
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.4NG185600.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding58.21.9e-1860107148
                          TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
      Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                          +g+WT+eEd++l+d+v+ +G g+W+ + r   ++R++k+c++rw ++l
  Pavir.4NG185600.1.p  60 KGPWTPEEDKRLKDYVEAHGEGNWNQVQRNARLNRCGKSCRLRWANHL 107
                          79******************************************9986 PP
2Myb_DNA-binding42.61.4e-13113156146
                          TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
      Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                          +g++ +eE +++++ + ++G++ W++ a++++ gRt++++k++w++
  Pavir.4NG185600.1.p 113 KGPFDAEEVDKIIKFHIMWGNK-WAKMASHLP-GRTDNEIKNYWNT 156
                          799*******************.*********.***********97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129423.39855111IPR017930Myb domain
SuperFamilySSF466891.8E-2957154IPR009057Homeodomain-like
SMARTSM007171.6E-1559109IPR001005SANT/Myb domain
PfamPF002492.8E-1660107IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.605.5E-2461114IPR009057Homeodomain-like
CDDcd001671.52E-1163107No hitNo description
PROSITE profilePS5129417.798112162IPR017930Myb domain
SMARTSM007171.2E-14112160IPR001005SANT/Myb domain
PfamPF002492.2E-12113156IPR001005SANT/Myb domain
CDDcd001673.21E-10115158No hitNo description
Gene3DG3DSA:1.10.10.605.0E-23115160IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 505 aa     Download sequence    Send to blast
MTVVKVEQEP ALELASEDRA EELSPPLSFG EYEDEDDEED EETDSEGCGG GGGGPPPLKK  60
GPWTPEEDKR LKDYVEAHGE GNWNQVQRNA RLNRCGKSCR LRWANHLRPD LKKGPFDAEE  120
VDKIIKFHIM WGNKWAKMAS HLPGRTDNEI KNYWNTRLKK HQRAGLPIYP EYLLSRVPDQ  180
DMNCHTPDES RGKKRSNELP QEKVVGMDDL VGDFMVFQHL DYGKDPVVPI NPLKRHASTG  240
DLSCVQIPAN TEKTFYSNDL NYVLTKSQSM PLGSAIANGY PIFDGNLSTS GTIHGSMKTE  300
LPSFQCSKYD FSNCWLLQCP SASIEQQIDT FIQSPEFMSS HNNGLLGTII NKGDVLDDPI  360
KSERFFEMPI PLGCNIVSQS NDYPARHPSS SVNGDCEPDL CLLAEIQDSN SPSGGSDAIF  420
TLGKSYPDAN FSVAGMSGTS LEAGFLNDDS LLSKDQSYLY SSGSLFDEEP CEERKPLIDA  480
GQWFDSAAWK SVPGAGNTPD FPGP*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A3e-27541601106B-MYB
1h8a_C3e-275616023126MYB TRANSFORMING PROTEIN
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Pvr.267010.0callus| leaf
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.4NG185600.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHF6794391e-104HF679439.1 Saccharum hybrid cultivar Co 86032 mRNA for ScMYB33 protein.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025812565.10.0transcription factor GAMYB-like isoform X1
TrEMBLA0A2T7DWT60.0A0A2T7DWT6_9POAL; Uncharacterized protein
STRINGPavir.Da00534.1.p0.0(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP129022331
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G06100.16e-57myb domain protein 33