PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pavir.4NG182600.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
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Family | C2H2 | ||||||||
Protein Properties | Length: 398aa MW: 42438 Da PI: 7.9482 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 16.3 | 2.7e-05 | 182 | 201 | 1 | 20 |
EEETTTTEEESSHHHHHHHH CS zf-C2H2 1 ykCpdCgksFsrksnLkrHi 20 ++Cp C k+F+r n++ H+ Pavir.4NG182600.1.p 182 FSCPVCYKTFNRYNNMQMHM 201 89*****************9 PP | |||||||
2 | zf-C2H2 | 14.1 | 0.00014 | 266 | 288 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 + C +Cgk F + + ++H +++ Pavir.4NG182600.1.p 266 FMCRKCGKAFAVRGDWRTHEKNC 288 89*****************9987 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF57667 | 8.48E-5 | 178 | 204 | No hit | No description |
Gene3D | G3DSA:3.30.160.60 | 7.1E-6 | 182 | 201 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
PROSITE profile | PS50157 | 9.743 | 182 | 209 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 0.45 | 182 | 204 | IPR015880 | Zinc finger, C2H2-like |
PROSITE pattern | PS00028 | 0 | 184 | 204 | IPR007087 | Zinc finger, C2H2 |
SuperFamily | SSF57667 | 1.12E-6 | 250 | 286 | No hit | No description |
Gene3D | G3DSA:3.30.160.60 | 1.7E-6 | 252 | 286 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
PROSITE profile | PS50157 | 8.808 | 266 | 286 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 49 | 266 | 286 | IPR015880 | Zinc finger, C2H2-like |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003676 | Molecular Function | nucleic acid binding | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 398 aa Download sequence Send to blast |
MGDPYTNFLR GYYSHFPPSF PTSSYASSYL HPPPPSPPIR EALPLLSSLT PSSSAANHHQ 60 HHDEVARDHK ACSRATSCRG QDAADQAAGE VTVALHIGLP SPSPSESAAG GGDTREPAAE 120 GSSSLQQPGD GHEGGGDGEE DADDGEDAAM AVGCASIGIG RLTKGQYWIP TPSQILIGPT 180 QFSCPVCYKT FNRYNNMQMH MWGHGSQYRK GPESLRGTQP TAMLRLPCYC CAAGCRNNID 240 HPRARPLKDF RTLQTHYRRK HGIKPFMCRK CGKAFAVRGD WRTHEKNCGK LWYCACGSDF 300 KHKRSLKDHI RAFGRGHAAC GIDCFDDLDD DDRDPSSEVD HAAGAGGGGG AAATNHTSSN 360 TAASAAAATA GGASSRRHHH WKPPPPPSRG SGGDRLL* |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Expressed in developing carpels (PubMed:17600712). Expressed in the shoot apical meristem and the replum (PubMed:25039392). {ECO:0000269|PubMed:17600712}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional regulator required for normal differentiation of the ovary transmitting tract cells and pollen tube growth. In Arabidopsis, the transmitting tract facilitates the transport of pollen tubes to the ovules for fertilization (PubMed:17600712). May play a role in the regulation of AGL8/FUL, which is required for normal pattern of cell division, expansion and differentiation during morphogenesis of the silique (PubMed:23515580). Plays a role in replum development by the activation of the homeobox protein KNAT1 (PubMed:25039392). {ECO:0000269|PubMed:17600712, ECO:0000269|PubMed:23515580, ECO:0000269|PubMed:25039392}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Pavir.4NG182600.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AC243261 | 0.0 | AC243261.1 Panicum virgatum clone PV_ABa107-B06, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004965894.1 | 0.0 | zinc finger protein WIP2 | ||||
Swissprot | Q9SVY1 | 1e-127 | ZWIP2_ARATH; Zinc finger protein WIP2 | ||||
TrEMBL | K3XXF8 | 0.0 | K3XXF8_SETIT; Uncharacterized protein | ||||
STRING | Pavir.Db00765.1.p | 0.0 | (Panicum virgatum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP586 | 38 | 170 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G57670.1 | 1e-115 | C2H2 family protein |
Link Out ? help Back to Top | |
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Phytozome | Pavir.4NG182600.1.p |
Publications ? help Back to Top | |||
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