PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.4NG178700.3.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family C3H
Protein Properties Length: 273aa    MW: 28263.4 Da    PI: 9.7834
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.4NG178700.3.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH21.15.7e-07630226
                         -S---SGGGGTS--TTTTT-SS-SS CS
              zf-CCCH  2 ktelCrffartGtCkyGdrCkFaHg 26
                         k ++C  f+ t  C++G++C+F H 
  Pavir.4NG178700.3.p  6 KSKPCTKFFSTAGCPFGASCHFLHN 30
                         7789********************7 PP
2zf-CCCH21.34.8e-077297227
                         -S---SGGGGTS--TTTTT-SS-SSS CS
              zf-CCCH  2 ktelCrffartGtCkyGdrCkFaHgp 27
                         kt+ C+ +     Ck G++C+FaHg+
  Pavir.4NG178700.3.p 72 KTRMCNKYNTAEGCKWGSKCHFAHGE 97
                         9***********************96 PP
3zf-CCCH37.73.5e-12238263127
                          --S---SGGGGTS--TTTTT-SS-SSS CS
              zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHgp 27 
                          +kt+lC +f++ G C +GdrC+FaHg+
  Pavir.4NG178700.3.p 238 FKTKLCENFSK-GSCTFGDRCHFAHGE 263
                          69*********.*************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS512575125No hitNo description
SMARTSM003560.3431IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010312.915432IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.109.5E-8630IPR000571Zinc finger, CCCH-type
SuperFamilySSF902296.15E-6632IPR000571Zinc finger, CCCH-type
PfamPF006423.1E-5630IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.4E-1466102IPR000571Zinc finger, CCCH-type
SuperFamilySSF902292.88E-869101IPR000571Zinc finger, CCCH-type
SMARTSM003562.37097IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010312.857098IPR000571Zinc finger, CCCH-type
SuperFamilySSF547913.36E-14139211IPR004088K Homology domain, type 1
SMARTSM003223.8E-10141211IPR004087K Homology domain
PROSITE profilePS5008414.802142206IPR004088K Homology domain, type 1
Gene3DG3DSA:3.30.1370.102.4E-15142210IPR004088K Homology domain, type 1
CDDcd001052.15E-13144206No hitNo description
PfamPF000133.5E-11144207IPR004088K Homology domain, type 1
Gene3DG3DSA:4.10.1000.105.7E-17236269IPR000571Zinc finger, CCCH-type
SMARTSM003561.3E-7237263IPR000571Zinc finger, CCCH-type
SuperFamilySSF902295.36E-9237268IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010317.084237264IPR000571Zinc finger, CCCH-type
PfamPF006421.2E-9238263IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003723Molecular FunctionRNA binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 273 aa     Download sequence    Send to blast
MGVGSKSKPC TKFFSTAGCP FGASCHFLHN FPGGYQAVAK MTNLGGPPVP APPGRIPMGP  60
GAPDGPPSPA MKTRMCNKYN TAEGCKWGSK CHFAHGEREL GKPMQMDNSM GVPPMGPGPN  120
GHFMPPPMPV PDMVPPSTFG ASATAKISVD ASLAGAIIGK GGTNTKHISR VTGAKLAIRD  180
NEADPNLKNI ELEGTFDQIK HASAMVTELI VRISGKAPLQ AKNNPGRGSH AGGAGSNFKT  240
KLCENFSKGS CTFGDRCHFA HGESELRKPA AA*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Pvr.45820.0callus| leaf| root| stem
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.4NG178700.3.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0342660.0BT034266.1 Zea mays full-length cDNA clone ZM_BFc0007J14 mRNA, complete cds.
GenBankBT0848330.0BT084833.1 Zea mays full-length cDNA clone ZM_BFb0189L10 mRNA, complete cds.
GenBankEU9690430.0EU969043.1 Zea mays clone 325755 zinc finger C-x8-C-x5-C-x3-H type family protein mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025810913.11e-173zinc finger CCCH domain-containing protein 44-like
SwissprotQ69XQ31e-160C3H44_ORYSJ; Zinc finger CCCH domain-containing protein 44
TrEMBLA0A3L6S1111e-178A0A3L6S111_PANMI; Zinc finger CCCH domain-containing protein 44-like isoform X1
STRINGPavir.Db00748.1.p0.0(Panicum virgatum)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G06770.13e-52C3H family protein