PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pavir.4NG175700.5.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
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Family | NAC | ||||||||
Protein Properties | Length: 351aa MW: 39162.5 Da PI: 4.7089 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 81.5 | 1.8e-25 | 30 | 130 | 34 | 128 |
NAM 34 ikev.diykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratk.....sgyWkatgkdkevlskkgelvglkktLvfy..kgrapk 115 ++ev +i++++P++Lp vk++ + +fF+++ k+y+tg+rk+r+++ + +W++tgk+k+vl+ g++ g+kk++v+y +++ k Pavir.4NG175700.5.p 30 VEEVdGICYTHPQKLP-GVKKNGSVSHFFHRTFKAYNTGNRKRRKINtddlaDVRWHKTGKTKPVLV-VGKHLGCKKIMVLYmsTEKGGK 117 678856**********.667778899******************74444666899************.8899**********54446667 PP NAM 116 gektdWvmheyrl 128 +ekt+Wvmh+y+l Pavir.4NG175700.5.p 118 AEKTNWVMHQYHL 130 78*********98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51005 | 21.649 | 1 | 149 | IPR003441 | NAC domain |
SuperFamily | SSF101941 | 2.75E-26 | 28 | 149 | IPR003441 | NAC domain |
Pfam | PF02365 | 3.2E-8 | 40 | 130 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 351 aa Download sequence Send to blast |
MSNPSKECPK CSHVIDNSDV VHQWPGLPKV EEVDGICYTH PQKLPGVKKN GSVSHFFHRT 60 FKAYNTGNRK RRKINTDDLA DVRWHKTGKT KPVLVVGKHL GCKKIMVLYM STEKGGKAEK 120 TNWVMHQYHL GTGEDEKEGE YVVSKLFFQQ QFKPGEKNAQ ELTTGDAVES MAAEADASDF 180 TTLPFEEHVS TIEEVAHNPE HNPYQGNENC EINIEENAAE GTVVHPSSEK PEGGDNPQSQ 240 DPKLWEGDSQ FELLDSQQLA GLAICDEFLL SQSQTSCGGG DEPRAIKPRL AVYAQLPTED 300 FKKDLEECQQ LEPPDAVNLE FDSTAEFRLS QIDFSQDSFM TWAGSKMIDD * |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Expressed in shoot and root apical meristems, in lateral root primordia, in the vasculature of young leaves and in the root stele. {ECO:0000269|PubMed:23907539}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor regulating the transcriptional activation response to gamma irradiation (PubMed:19549833). Required for stem-cell death induced by UVB or by gamma irradiation (PubMed:20634150). Not required for ATM activation, but participates in pathways governed by both ATM and ATR sensor kinases (PubMed:19549833). Involved in DNA damage response (DDR) system that regulates cell cycle arrest (PubMed:24399300). Functional homolog of animal p53 (PubMed:24736489). Regulates SMR5 and SMR7 transcription (PubMed:24399300). Regulates DNA repair and cytokinin signaling separately and plays a key role in controlling lateral root formation under genotoxic stress. {ECO:0000269|PubMed:19549833, ECO:0000269|PubMed:20634150, ECO:0000269|PubMed:24399300, ECO:0000305|PubMed:24736489}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Pavir.4NG175700.5.p |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Not induced by zeocin or ionizing radiation treatment. {ECO:0000269|PubMed:23907539}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_025813541.1 | 0.0 | SUPPRESSOR OF GAMMA RESPONSE 1 isoform X1 | ||||
Swissprot | Q6NQK2 | 4e-95 | NAC8_ARATH; SUPPRESSOR OF GAMMA RESPONSE 1 | ||||
TrEMBL | A0A3L6PBT7 | 0.0 | A0A3L6PBT7_PANMI; NAC domain-containing protein 8-like | ||||
STRING | Pavir.Db01100.1.p | 0.0 | (Panicum virgatum) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G25580.1 | 5e-95 | NAC family protein |
Link Out ? help Back to Top | |
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Phytozome | Pavir.4NG175700.5.p |