PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pavir.4NG174200.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
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Family | bHLH | ||||||||
Protein Properties | Length: 393aa MW: 41548.3 Da PI: 7.9365 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 42.3 | 1.4e-13 | 116 | 166 | 2 | 55 |
HHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 2 rrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 +++h +Er+RR+++N+ ++ Lr+l+P + k+ + a+i +v+YIk+Lq Pavir.4NG174200.1.p 116 KTSHITVERNRRKQMNEHLAVLRSLMPCF---YVKRGDQASIIGGVVDYIKELQ 166 799*************************9...9********************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50888 | 14.894 | 114 | 165 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SuperFamily | SSF47459 | 2.36E-17 | 114 | 189 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 1.50E-14 | 114 | 170 | No hit | No description |
Pfam | PF00010 | 7.0E-11 | 116 | 166 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 6.1E-14 | 116 | 178 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 1.6E-11 | 120 | 171 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
PROSITE profile | PS51671 | 8.696 | 326 | 392 | IPR002912 | ACT domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0008152 | Biological Process | metabolic process | ||||
GO:0016597 | Molecular Function | amino acid binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 393 aa Download sequence Send to blast |
MAEALCDQLF SDVDAGELMM HHASDADDLL GILEAWEDCV TGGGCTTPRG GDEVPQATDS 60 TARASPPKPA AGNVRRMGDR DDATVPAAPP KRRRCSPAVS SSEAAATSDD GAASNKTSHI 120 TVERNRRKQM NEHLAVLRSL MPCFYVKRGD QASIIGGVVD YIKELQQVLQ SLEAKKQRKA 180 YTDQVLSPRL PPACCSPRPP LSPRPPLPPL KFTPPISPRP SFPISPRTPP PGPGSPYKVR 240 RQPPLPLPLS PPGSAYASPA RTPTREPSPA SSSYLPSLDK IAAELCAYAA GTSNKPQRPA 300 LLPATGGGGV VLLPDVRVEF SGANLVVKTV SHRAPGQAVK VIAALEGRSL EILDAKISTV 360 DDTAVNSFTI KIGIECELSA EELVQEIQQA FS* |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Pvr.17940 | 0.0 | stem |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Pavir.4NG174200.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | FP093390 | 1e-104 | FP093390.1 Phyllostachys edulis cDNA clone: bphyem213c13, full insert sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_025813040.1 | 0.0 | transcription factor SPEECHLESS-like | ||||
TrEMBL | A0A2T7DY22 | 0.0 | A0A2T7DY22_9POAL; Uncharacterized protein | ||||
STRING | Pavir.Db01402.1.p | 0.0 | (Panicum virgatum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP3484 | 35 | 77 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G53210.1 | 2e-37 | bHLH family protein |
Link Out ? help Back to Top | |
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Phytozome | Pavir.4NG174200.1.p |