PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.4NG156100.1.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family MYB_related
Protein Properties Length: 581aa    MW: 66068.4 Da    PI: 9.3478
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.4NG156100.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding22.92e-07371412347
                          SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
      Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                          +WT+eE e+ ++ v++ G+  Wk  a  +g  +++ ++k+ w+  
  Pavir.4NG156100.1.p 371 KWTQEEYEIVKRFVERNGTS-WKELATDLG--KSEIHVKDTWRRM 412
                          8*****************99.********8..9*******99975 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM007173.9E-4295366IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.609.5E-7297359IPR009057Homeodomain-like
PROSITE profilePS500905.413298364IPR017877Myb-like domain
CDDcd001670.00948298364No hitNo description
SuperFamilySSF466896.31E-8344425IPR009057Homeodomain-like
SMARTSM007170.049368415IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.608.4E-9371423IPR009057Homeodomain-like
PROSITE profilePS500907.306371413IPR017877Myb-like domain
PfamPF139211.6E-8372430No hitNo description
PROSITE profilePS500908.223414482IPR017877Myb-like domain
SMARTSM007170.0028418484IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.602.0E-8424467IPR009057Homeodomain-like
SuperFamilySSF466896.39E-8462539IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.602.3E-6468535IPR009057Homeodomain-like
PROSITE profilePS500907.979484537IPR017877Myb-like domain
SMARTSM0071715488539IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 581 aa     Download sequence    Send to blast
MTGILLNTKS IKQGMERGSA AECSEVKAVL GSNEEKKAQK SKKDKGQRKR KKDKAKGHGG  60
DGDRLIQSDD KNHSVDMEHA EVSAKMTERP CLENTEVIMS KRDVKKDRKK NKKNKEVDTI  120
SQKQTLDAND GTVGSEYLEM NEGEGAHDSK SKKGKRKHRD GETSSNGSSH DQIVSGGDKK  180
RKRKEPSIPL VEGNEVDTSK IWQNTKGMKK RSKERDNIGV DLSLNTPAGD GKNYNKEKNT  240
SKDDNDGGKS RKVNMAHRKD KGRRVSFTDD VEVFNIDGGD DHQEGDGSGD SGLVHGKRFT  300
PEEDAKLMEA IEKYAEMKQL GDKGLEMIGA SMKHPEIRGC WAEIATSLPH RPQMAVYKRA  360
RILLYRSAER KWTQEEYEIV KRFVERNGTS WKELATDLGK SEIHVKDTWR RMKPKNLKKG  420
AWTQDEYQNL FDLVNLDLRV KAHQKIAPSH RQLRDNISWE AISEKLTTRS NKDCCLKWYQ  480
QLASPLVKEG IWADTDDYLL MEALQKVDAV CVEDVDWERL LDHRSGELCR QRWNQMVHMI  540
GGHREKPFIE QVEVLARRYC PEMLDYRKAE SSDKLTGGTD *
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
14349DKGQRKR
24751RKRKK
34752RKRKKD
44753RKRKKDK
5104112KKDRKKNKK
6178183KKRKRK
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Pvr.19790.0callus| leaf| root
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.4NG156100.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025811598.10.0RNA polymerase I termination factor-like isoform X1
TrEMBLA0A2S3HM590.0A0A2S3HM59_9POAL; Uncharacterized protein
STRINGPavir.Db02194.1.p0.0(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP54052635
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G41020.18e-94MYB_related family protein