PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.4NG153800.5.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family CO-like
Protein Properties Length: 407aa    MW: 43846.7 Da    PI: 4.9506
Description CO-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.4NG153800.5.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-B_box20.88.3e-07546540
             zf-B_box  5 kCpeHeekelqlfCedCqqllCedClleeHkg......Htvv 40
                          C+ ++e++   +C+++   lC +C  + H+       Ht++
  Pavir.4NG153800.5.p  5 LCDFCGEQRSMVYCRSDAASLCLSCDRNVHSAnalsrrHTRT 46
                         6*****************************657888889876 PP
2zf-B_box25.33.1e-084890541
             zf-B_box  5 kCpeHeekelqlfCedCqqllCedClleeHkg......Htvvp 41
                          C+++ ++++++ C   ++ lC++C  ++H        H++++
  Pavir.4NG153800.5.p 48 LCDRCASQPATIRCLVENTSLCQNCDWNGHTTgssaagHRRQT 90
                         7*****************************6578888888766 PP
3CCT64.43.3e-22349392144
                  CCT   1 ReaallRYkeKrktRkFeKkirYesRKavAesRpRvKGrFvkqa 44 
                          R+ a++RYkeK+k+RkF+KkirY+sRKa+A+ R+RvKGrFvk+ 
  Pavir.4NG153800.5.p 349 RDSAITRYKEKKKRRKFDKKIRYASRKARADVRKRVKGRFVKAG 392
                          899**************************************985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003361.2E-12148IPR000315B-box-type zinc finger
PROSITE profilePS501199.826148IPR000315B-box-type zinc finger
CDDcd000217.59E-8548No hitNo description
PROSITE profilePS501199.0584491IPR000315B-box-type zinc finger
CDDcd000211.59E-54891No hitNo description
PfamPF006431.7E-54890IPR000315B-box-type zinc finger
SMARTSM003360.614991IPR000315B-box-type zinc finger
PfamPF062035.6E-17349391IPR010402CCT domain
PROSITE profilePS5101715.477349391IPR010402CCT domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005622Cellular Componentintracellular
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 407 aa     Download sequence    Send to blast
MMGALCDFCG EQRSMVYCRS DAASLCLSCD RNVHSANALS RRHTRTLLCD RCASQPATIR  60
CLVENTSLCQ NCDWNGHTTG SSAAGHRRQT INCYSGCPSS AELSRIWSFV SDIPNVAPEP  120
NCEQGISMMS ISESGVSNQD NAAGDNNLFD IASATLTSDL DTCDKPLVGS SSGAGVNLLP  180
LAPDQTAGTV DSTTTKVPYT PDKDMFSKDS IYEDFCVDDV DLAFENYEEL FGTSHIQTEQ  240
LFDDAGIDSY FEVKEVPAGD STEPKLMQPA NSNAVSADSG MSNPGVKGDS SVCIPPRQAR  300
SSLSLSFSGL TGESSAGDHQ DCVVSSLLLM GEPPWQPPGP EGSIAGGSRD SAITRYKEKK  360
KRRKFDKKIR YASRKARADV RKRVKGRFVK AGEAYDYDPL SQTRSY*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1358362KKKRR
2358363KKKRRK
3359363KKRRK
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Pvr.163020.0callus| stem
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.4NG153800.5.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU9627670.0EU962767.1 Zea mays clone 245350 CCT motif family protein mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020399253.10.0uncharacterized protein LOC100282916 isoform X4
SwissprotQ9SSE51e-126COL9_ARATH; Zinc finger protein CONSTANS-LIKE 9
TrEMBLK7VTP20.0K7VTP2_MAIZE; C2C2-CO-like transcription factor
STRINGGRMZM2G013398_P040.0(Zea mays)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G48250.15e-86B-box type zinc finger protein with CCT domain