PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pavir.4NG153800.3.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
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Family | CO-like | ||||||||
Protein Properties | Length: 407aa MW: 43846.7 Da PI: 4.9506 | ||||||||
Description | CO-like family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-B_box | 20.8 | 8.3e-07 | 5 | 46 | 5 | 40 |
zf-B_box 5 kCpeHeekelqlfCedCqqllCedClleeHkg......Htvv 40 C+ ++e++ +C+++ lC +C + H+ Ht++ Pavir.4NG153800.3.p 5 LCDFCGEQRSMVYCRSDAASLCLSCDRNVHSAnalsrrHTRT 46 6*****************************657888889876 PP | |||||||
2 | zf-B_box | 25.3 | 3.1e-08 | 48 | 90 | 5 | 41 |
zf-B_box 5 kCpeHeekelqlfCedCqqllCedClleeHkg......Htvvp 41 C+++ ++++++ C ++ lC++C ++H H++++ Pavir.4NG153800.3.p 48 LCDRCASQPATIRCLVENTSLCQNCDWNGHTTgssaagHRRQT 90 7*****************************6578888888766 PP | |||||||
3 | CCT | 64.4 | 3.3e-22 | 349 | 392 | 1 | 44 |
CCT 1 ReaallRYkeKrktRkFeKkirYesRKavAesRpRvKGrFvkqa 44 R+ a++RYkeK+k+RkF+KkirY+sRKa+A+ R+RvKGrFvk+ Pavir.4NG153800.3.p 349 RDSAITRYKEKKKRRKFDKKIRYASRKARADVRKRVKGRFVKAG 392 899**************************************985 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00336 | 1.2E-12 | 1 | 48 | IPR000315 | B-box-type zinc finger |
PROSITE profile | PS50119 | 9.826 | 1 | 48 | IPR000315 | B-box-type zinc finger |
CDD | cd00021 | 7.59E-8 | 5 | 48 | No hit | No description |
PROSITE profile | PS50119 | 9.058 | 44 | 91 | IPR000315 | B-box-type zinc finger |
CDD | cd00021 | 1.59E-5 | 48 | 91 | No hit | No description |
Pfam | PF00643 | 1.7E-5 | 48 | 90 | IPR000315 | B-box-type zinc finger |
SMART | SM00336 | 0.61 | 49 | 91 | IPR000315 | B-box-type zinc finger |
Pfam | PF06203 | 5.6E-17 | 349 | 391 | IPR010402 | CCT domain |
PROSITE profile | PS51017 | 15.477 | 349 | 391 | IPR010402 | CCT domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0005622 | Cellular Component | intracellular | ||||
GO:0005515 | Molecular Function | protein binding | ||||
GO:0008270 | Molecular Function | zinc ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 407 aa Download sequence Send to blast |
MMGALCDFCG EQRSMVYCRS DAASLCLSCD RNVHSANALS RRHTRTLLCD RCASQPATIR 60 CLVENTSLCQ NCDWNGHTTG SSAAGHRRQT INCYSGCPSS AELSRIWSFV SDIPNVAPEP 120 NCEQGISMMS ISESGVSNQD NAAGDNNLFD IASATLTSDL DTCDKPLVGS SSGAGVNLLP 180 LAPDQTAGTV DSTTTKVPYT PDKDMFSKDS IYEDFCVDDV DLAFENYEEL FGTSHIQTEQ 240 LFDDAGIDSY FEVKEVPAGD STEPKLMQPA NSNAVSADSG MSNPGVKGDS SVCIPPRQAR 300 SSLSLSFSGL TGESSAGDHQ DCVVSSLLLM GEPPWQPPGP EGSIAGGSRD SAITRYKEKK 360 KRRKFDKKIR YASRKARADV RKRVKGRFVK AGEAYDYDPL SQTRSY* |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 358 | 362 | KKKRR |
2 | 358 | 363 | KKKRRK |
3 | 359 | 363 | KKRRK |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Pvr.16302 | 0.0 | callus| stem |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Pavir.4NG153800.3.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | EU962767 | 0.0 | EU962767.1 Zea mays clone 245350 CCT motif family protein mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020399253.1 | 0.0 | uncharacterized protein LOC100282916 isoform X4 | ||||
Swissprot | Q9SSE5 | 1e-126 | COL9_ARATH; Zinc finger protein CONSTANS-LIKE 9 | ||||
TrEMBL | K7VTP2 | 0.0 | K7VTP2_MAIZE; C2C2-CO-like transcription factor | ||||
STRING | GRMZM2G013398_P04 | 0.0 | (Zea mays) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G48250.1 | 5e-86 | B-box type zinc finger protein with CCT domain |
Link Out ? help Back to Top | |
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Phytozome | Pavir.4NG153800.3.p |