PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pavir.4NG140500.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
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Family | CPP | ||||||||
Protein Properties | Length: 506aa MW: 55471.3 Da PI: 6.6684 | ||||||||
Description | CPP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | TCR | 44.3 | 3.6e-14 | 73 | 112 | 1 | 41 |
TCR 1 kekkgCnCkkskClkkYCeCfaagkkCseeCkCedCkNkee 41 k+kk+CnCk+s+Clk+YCeCfaag +C+ C+C++C N+ e Pavir.4NG140500.1.p 73 KKKKHCNCKNSQCLKLYCECFAAGDYCDG-CNCKQCGNTVE 112 589**************************.********987 PP | |||||||
2 | TCR | 50.3 | 4.7e-16 | 157 | 196 | 1 | 40 |
TCR 1 kekkgCnCkkskClkkYCeCfaagkkCseeCkCedCkNke 40 k++kgC+Ckks ClkkYCeCf+a+ Cs++CkC dCkN e Pavir.4NG140500.1.p 157 KHNKGCHCKKSGCLKKYCECFQANILCSKNCKCMDCKNFE 196 589***********************************65 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM01114 | 1.8E-14 | 73 | 113 | IPR033467 | Tesmin/TSO1-like CXC domain |
PROSITE profile | PS51634 | 34.985 | 74 | 197 | IPR005172 | CRC domain |
Pfam | PF03638 | 5.6E-11 | 75 | 110 | IPR005172 | CRC domain |
SMART | SM01114 | 6.0E-19 | 157 | 198 | IPR033467 | Tesmin/TSO1-like CXC domain |
Pfam | PF03638 | 1.5E-12 | 160 | 195 | IPR005172 | CRC domain |
Sequence ? help Back to Top |
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Protein Sequence Length: 506 aa Download sequence Send to blast |
MEQEKQQRVE PPAPAPASVP QAASEPRASP QPQEQPKPAV PVQPSIPVTR PWPMAIIPSV 60 KPVVEMKSGT PAKKKKHCNC KNSQCLKLYC ECFAAGDYCD GCNCKQCGNT VENEKGRQEA 120 INNTKLRNPN AFQPKIENGP IIPSVRKDAG APPSLPKHNK GCHCKKSGCL KKYCECFQAN 180 ILCSKNCKCM DCKNFEGSEE LRAIIQGDNS CDRNNIQQAA NVALNGAIGS SGYRFSPVRR 240 KRLPEDPHYQ RLNVEGSMMQ VQFPEANHVD ASQIASSSEL EGSTGNFQCK SKLVYRSPLA 300 NTIHLTDVNA LANRLVIVCR KAAEGFTAIA DNKEEMEIDR EIWTNTDQNF DENKKELQKA 360 AASQLTEIDQ QIPAECGSYC SNTQEDCSNT QEDSMPASPG TRALLCDEQD LTFGTAYRSS 420 IPVVLHDQDI SELQTAQENA VLRAFRNYLQ LIIARGQVNA EGKSSSGTGV ELDAMRNHES 480 STSLPPVKAE EKSNDPDDTK NPNTR* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5fd3_A | 2e-27 | 68 | 206 | 4 | 132 | Protein lin-54 homolog |
5fd3_B | 2e-27 | 68 | 206 | 4 | 132 | Protein lin-54 homolog |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Pavir.4NG140500.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_025810512.1 | 0.0 | protein tesmin/TSO1-like CXC 5 isoform X1 | ||||
TrEMBL | A0A2T7DYB7 | 0.0 | A0A2T7DYB7_9POAL; Uncharacterized protein | ||||
STRING | Pavir.Db01441.1.p | 0.0 | (Panicum virgatum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP5755 | 26 | 53 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G29000.1 | 2e-91 | Tesmin/TSO1-like CXC domain-containing protein |
Link Out ? help Back to Top | |
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Phytozome | Pavir.4NG140500.1.p |