PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pavir.4NG128700.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
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Family | MYB | ||||||||
Protein Properties | Length: 254aa MW: 26896.1 Da PI: 8.143 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 51.8 | 1.9e-16 | 14 | 61 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg+WT Ed +l+ +vk +G g W+ ++++ g++R++k+c++rw++yl Pavir.4NG128700.1.p 14 RGAWTSKEDGILAAYVKAHGEGKWREVPQKAGLRRCGKSCRLRWLNYL 61 89********************************************97 PP | |||||||
2 | Myb_DNA-binding | 51.7 | 1.9e-16 | 67 | 111 | 1 | 47 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 rg+ + +E++l+v+++k+lG++ W++Ia++++ gRt++++k++w++ Pavir.4NG128700.1.p 67 RGNISDDEEDLIVRLHKLLGNR-WSLIAARLP-GRTDNEIKNYWNST 111 78999*****************.*********.***********986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 4.8E-23 | 6 | 64 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 16.133 | 9 | 61 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 4.3E-28 | 11 | 108 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 3.7E-11 | 13 | 63 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 2.4E-14 | 14 | 61 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 4.10E-8 | 16 | 61 | No hit | No description |
PROSITE profile | PS51294 | 24.769 | 62 | 116 | IPR017930 | Myb domain |
Gene3D | G3DSA:1.10.10.60 | 1.7E-23 | 65 | 115 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 1.8E-15 | 66 | 114 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 1.5E-14 | 67 | 111 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 1.62E-11 | 71 | 112 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0090379 | Biological Process | secondary cell wall biogenesis involved in seed trichome differentiation | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 254 aa Download sequence Send to blast |
MGRRACCAKE GMKRGAWTSK EDGILAAYVK AHGEGKWREV PQKAGLRRCG KSCRLRWLNY 60 LRPNIKRGNI SDDEEDLIVR LHKLLGNRWS LIAARLPGRT DNEIKNYWNS TLGRRVGAGG 120 SRAVVAGKPD APAASGSCET GQKGAAAAPR AGPDSAGSAA AETAVRAPKA VRCRAGSLLF 180 FHSDQDTGGG AGGPGEGPDD CSRSAASTFA AGVDEEPCFS GSGDWMDDVR ALESFLENDE 240 EWAMCQVTNE QLA* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1a5j_A | 1e-25 | 12 | 116 | 5 | 108 | B-MYB |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Controls the expression of genes involved in anthocyanin biosynthesis. Regulates the expression of at least 3 structural genes: chalcone synthase, dihydroflavonol reductase and flavonol O(3) glucosyltransferase. C1 acts as a trans-acting factor. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Pavir.4NG128700.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AY135019 | 1e-144 | AY135019.1 Zea mays PL transcription factor (pl) mRNA, pl-W22 allele, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_025812125.1 | 1e-126 | anthocyanin regulatory C1 protein-like | ||||
Swissprot | P10290 | 1e-90 | MYBC_MAIZE; Anthocyanin regulatory C1 protein | ||||
TrEMBL | A0A2T7E1M4 | 1e-125 | A0A2T7E1M4_9POAL; Uncharacterized protein | ||||
STRING | Sb10g006700.1 | 1e-109 | (Sorghum bicolor) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP116 | 37 | 448 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G13540.1 | 4e-57 | myb domain protein 5 |
Link Out ? help Back to Top | |
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Phytozome | Pavir.4NG128700.1.p |